Gm29019 Gene Detail

Summary

• Symbol
  Gm29019
• Name
  predicted gene 29019

• Feature Type
  lncRNA gene
• IDs
  MGI:5579725
• Alliance
  gene page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr15:82866926-82872031 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 15, Syntenic

Strain
Comparison

• SNPs within 2kb
  31 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5579725	lncRNA gene	Chr15:82866926-82872031 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0005611	lincRNA gene	Chr15:83627951-83635021 (-)
A/J	MGP_AJ_G0005598	lincRNA gene	Chr15:80583793-80588893 (-)
AKR/J	MGP_AKRJ_G0005577	lincRNA gene	Chr15:82899297-82904396 (-)
BALB/cJ	MGP_BALBcJ_G0005578	lincRNA gene	Chr15:80726595-80731647 (-)
C3H/HeJ	MGP_C3HHeJ_G0005525	lincRNA gene	Chr15:82896691-82906006 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0005736	lincRNA gene	Chr15:86857474-86864305 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0005101	lincRNA gene	Chr15:76981534-76986706 (-)
CAST/EiJ	MGP_CASTEiJ_G0005469	lincRNA gene	Chr15:83632361-83639058 (-)
CBA/J	MGP_CBAJ_G0005515	lincRNA gene	Chr15:89611746-89616781 (-)
DBA/2J	MGP_DBA2J_G0005530	lincRNA gene	Chr15:80084930-80089997 (-)
FVB/NJ	MGP_FVBNJ_G0005557	lincRNA gene	Chr15:79119593-79124686 (-)
LP/J	MGP_LPJ_G0005614	lincRNA gene	Chr15:83793991-83801713 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0005542	lincRNA gene	Chr15:94535785-94540888 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0005736	lincRNA gene	Chr15:82927929-82933054 (-)
PWK/PhJ	MGP_PWKPhJ_G0005418	lincRNA gene	Chr15:80056874-80062054 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0005337	lincRNA gene	Chr15:82644818-82649883 (-)
WSB/EiJ	MGP_WSBEiJ_G0005519	lincRNA gene	Chr15:83429098-83434072 (-)

Homology

• Gene Tree
  Gm29019
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm29019
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21

• Ensembl
  ENSMUSG00000100552 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000100552	Ensembl Gene Model | MGI Sequence Detail	5106	C57BL/6J
transcript	ENSMUST00000188623	Ensembl | MGI Sequence Detail	564	Not Applicable

References

• Summaries
  All 4

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;

TSS for Gm29019:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr135601	Chr15:82872034-82872067 (-)	-20 bp
Tssr135600	Chr15:82871894-82871906 (-)	131 bp
Tssr135599	Chr15:82871879-82871891 (-)	146 bp