Gm28845 Gene Detail

Summary

• Symbol
  Gm28845
• Name
  predicted gene 28845

• Feature Type
  protein coding gene
• IDs
  MGI:5579551
• Alliance
  gene page
• Transcription Start Sites
  6 TSS

Location &
Maps

• Sequence Map
  Chr1:65139778-65158717 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, Syntenic

Strain
Comparison

• SNPs within 2kb
  182 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5579551	protein coding gene	Chr1:65139778-65158717 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0016106	protein coding gene	Chr1:65299958-65319587 (-)
A/J	MGP_AJ_G0016089	protein coding gene	Chr1:62995644-63014495 (-)
AKR/J	MGP_AKRJ_G0016046	protein coding gene	Chr1:64758275-64778345 (-)
BALB/cJ	MGP_BALBcJ_G0016044	protein coding gene	Chr1:63090368-63111190 (-)
C3H/HeJ	MGP_C3HHeJ_G0015875	protein coding gene	Chr1:65032835-65053291 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0016497	protein coding gene	Chr1:67818373-67836139 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0014218	protein coding gene	Chr1:59048168-59064798 (-)
CAST/EiJ	MGP_CASTEiJ_G0015459	protein coding gene	Chr1:64303571-64322159 (-)
CBA/J	MGP_CBAJ_G0015848	protein coding gene	Chr1:70022987-70040486 (-)
DBA/2J	MGP_DBA2J_G0015949	protein coding gene	Chr1:62399082-62416695 (-)
FVB/NJ	MGP_FVBNJ_G0015952	protein coding gene	Chr1:61670209-61689022 (-)
LP/J	MGP_LPJ_G0016021	protein coding gene	Chr1:66196786-66215785 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0015972	protein coding gene	Chr1:72883253-72903489 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0016544	protein coding gene	Chr1:64744725-64770445 (-)
PWK/PhJ	MGP_PWKPhJ_G0015245	protein coding gene	Chr1:61796384-61813630 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0015025	protein coding gene	Chr1:64227508-64244711 (-)
WSB/EiJ	MGP_WSBEiJ_G0015521	protein coding gene	Chr1:64456144-64476716 (-)

Homology

• Gene Tree
  Gm28845
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving Gm28845
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• UniProt
  1

• Ensembl
  ENSMUSG00000100846 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000100846	Ensembl Gene Model | MGI Sequence Detail	18940	C57BL/6J
transcript	ENSMUST00000144760	Ensembl | MGI Sequence Detail	733	Not Applicable
polypeptide	ENSMUSP00000159648	Ensembl | MGI Sequence Detail	214	Not Applicable

Protein
Information

• UniProt
  1 Sequence
• InterPro Domains
  IPR038776 Uncharacterized protein C2orf80

References

• Summaries
  All 7

  Phenotypes 4
• Earliest
  J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
• Latest
  J:7938 Juriloff DM, et al., Genetic and developmental studies of a new mouse mutation that produces otocephaly. J Craniofac Genet Dev Biol. 1985;5(2):121-45

TSS for Gm28845:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr11982	Chr1:65152694-65152696 (-)	6,022 bp
Tssr11981	Chr1:65149348-65149433 (-)	9,326 bp
Tssr11980	Chr1:65149289-65149325 (-)	9,410 bp
Tssr11979	Chr1:65149260-65149267 (-)	9,453 bp
Tssr11978	Chr1:65149245-65149253 (-)	9,468 bp
Tssr11977	Chr1:65148983-65148991 (-)	9,730 bp