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Gm28836 Gene Detail
Summary
  • Symbol
    Gm28836
  • Name
    predicted gene 28836
  • Feature Type
    lncRNA gene
  • IDs
    MGI:5579542
    NCBI Gene: 102635593
  • Alliance
    gene page
  • Transcription Start Sites
    2 TSS
Location &
Maps
more
  • Sequence Map
    Chr1:21320583-21341817 bp, - strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 1, Syntenic
Strain
Comparison
more
  • SNPs within 2kb
    294 from dbSNP Build 142
  • Strain Annotations
    14
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_5579542
 lncRNA gene Chr1:21277752-21341909 (-)
129S1/SvImJ MGP_129S1SvImJ_G0002654
 antisense lncRNA gene Chr1:18889159-18911043 (-)
A/J MGP_AJ_G0002630
 antisense lncRNA gene Chr1:18654157-18675098 (-)
AKR/J MGP_AKRJ_G0002610
 antisense lncRNA gene Chr1:18699767-18736404 (-)
BALB/cJ MGP_BALBcJ_G0002616
 antisense lncRNA gene Chr1:18359440-18380372 (-)
C3H/HeJ MGP_C3HHeJ_G0002576
 antisense lncRNA gene Chr1:18736687-18758124 (-)
C57BL/6NJ MGP_C57BL6NJ_G0002760
 antisense lncRNA gene Chr1:19776477-19796659 (-)
CAROLI/EiJ no annotation
CAST/EiJ no annotation
CBA/J MGP_CBAJ_G0002571
 antisense lncRNA gene Chr1:20231970-20263190 (-)
DBA/2J MGP_DBA2J_G0002576
 antisense lncRNA gene Chr1:18165259-18186788 (-)
FVB/NJ MGP_FVBNJ_G0002596
 antisense lncRNA gene Chr1:17925250-17945713 (-)
LP/J MGP_LPJ_G0002656
 antisense lncRNA gene Chr1:19144378-19181025 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0002587
 antisense lncRNA gene Chr1:21171056-21199203 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0002765
 antisense lncRNA gene Chr1:18686738-18716914 (-)
PWK/PhJ no annotation
SPRET/EiJ MGP_SPRETEiJ_G0002460
 antisense lncRNA gene Chr1:18795403-18820207 (-)
WSB/EiJ no annotation



Homology
less
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    3 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    2
  • GO References
    1
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    710
  • Tissues
    1
  • Literature Summary
    1
Sequences &
Gene Models
less
  • All Sequences
    18
  • RefSeq
    1
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000099343 Ensembl Gene Model | MGI Sequence Detail 21235 C57BL/6J ±  kb
transcript ENSMUST00000185842 Ensembl | MGI Sequence Detail 633 Not Applicable  
For the selected sequence
Molecular
Reagents
less
  • All nucleic 4
    Primer pair 4
References
more
  • Summaries
    All 8
    Developmental Gene Expression 1
    Gene Ontology 1
    Phenotypes 3
  • Earliest
    J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14
  • Latest
    J:287849 Wang YM, et al., MicroRNA-197 controls ADAM10 expression to mediate MeCP2's role in the differentiation of neuronal progenitors. Cell Death Differ. 2019 Oct;26(10):1863-1879
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
04/09/2024
MGI 6.23 		The Jackson Laboratory