Gm28784 Gene Detail

Summary

• Symbol
  Gm28784
• Name
  predicted gene 28784

• Feature Type
  lncRNA gene
• IDs
  MGI:5579490
  NCBI Gene: 102634541
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr1:17238627-17243327 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, Syntenic

Strain
Comparison

• SNPs within 2kb
  46 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5579490	lncRNA gene	Chr1:17238626-17243333 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0004777	lincRNA gene	Chr1:14701602-14706302 (+)
A/J	MGP_AJ_G0004758	lincRNA gene	Chr1:14507014-14511714 (+)
AKR/J	MGP_AKRJ_G0004737	lincRNA gene	Chr1:14526373-14531047 (+)
BALB/cJ	MGP_BALBcJ_G0004740	lincRNA gene	Chr1:14219215-14223915 (+)
C3H/HeJ	MGP_C3HHeJ_G0004688	lincRNA gene	Chr1:14574411-14579111 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0004890	lincRNA gene	Chr1:15364466-15369166 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0004324	lincRNA gene	Chr1:13064562-13069305 (+)
CAST/EiJ	MGP_CASTEiJ_G0004644	lincRNA gene	Chr1:14616515-14621219 (+)
CBA/J	MGP_CBAJ_G0004681	lincRNA gene	Chr1:15687195-15691895 (+)
DBA/2J	MGP_DBA2J_G0004699	lincRNA gene	Chr1:14121655-14126355 (+)
FVB/NJ	MGP_FVBNJ_G0004719	lincRNA gene	Chr1:13880141-13884841 (+)
LP/J	MGP_LPJ_G0004778	lincRNA gene	Chr1:14889875-14894575 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0004704	lincRNA gene	Chr1:16338440-16343140 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0004894	lincRNA gene	Chr1:14495879-14500579 (+)
PWK/PhJ	MGP_PWKPhJ_G0004596	lincRNA gene	Chr1:13857236-13861927 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0004524	lincRNA gene	Chr1:14646504-14651093 (+)
WSB/EiJ	MGP_WSBEiJ_G0004686	lincRNA gene	Chr1:14447852-14452552 (+)

Homology

• Gene Tree
  Gm28784
  

Expression

• Assay Results
  706
• cDNA Data
  2

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  24
• RefSeq
  1

• Ensembl
  ENSMUSG00000099899 (Evidence)
• NCBI Gene
  102634541

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000099899	Ensembl Gene Model | MGI Sequence Detail	4701	C57BL/6J
transcript	ENSMUST00000187817	Ensembl | MGI Sequence Detail	1011	Not Applicable

Molecular
Reagents

• All nucleic 2

  cDNA 2

References

• Summaries
  All 5
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;