Gm28778 Gene Detail

Summary

• Symbol
  Gm28778
• Name
  predicted gene 28778

• Feature Type
  protein coding gene
• IDs
  MGI:5579484
• Alliance
  gene page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr1:53336270-53365502 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, Syntenic

Strain
Comparison

• SNPs within 2kb
  248 from dbSNP Build 142
• Strain Annotations
  16

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5579484	protein coding gene	Chr1:53336270-53365502 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0016018	protein coding gene	Chr1:52840688-52863366 (+)
A/J	MGP_AJ_G0016000	protein coding gene	Chr1:51059804-51077603 (+)
AKR/J	MGP_AKRJ_G0015956	protein coding gene	Chr1:52169453-52195212 (+)
BALB/cJ	MGP_BALBcJ_G0015957	protein coding gene	Chr1:50877384-50902002 (+)
C3H/HeJ	no annotation
C57BL/6NJ	MGP_C57BL6NJ_G0016408	protein coding gene	Chr1:55018222-55041054 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0014116	protein coding gene	Chr1:40812856-40839097 (-)
CAST/EiJ	MGP_CASTEiJ_G0015370	protein coding gene	Chr1:52036160-52061574 (+)
CBA/J	no annotation
DBA/2J	MGP_DBA2J_G0015861	protein coding gene	Chr1:50326461-50350320 (+)
FVB/NJ	MGP_FVBNJ_G0015863	protein coding gene	Chr1:49783510-49805037 (+)
LP/J	MGP_LPJ_G0015932	protein coding gene	Chr1:53263383-53284484 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0015883	protein coding gene	Chr1:59596027-59618717 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0016456	protein coding gene	Chr1:52276481-52300261 (+)
PWK/PhJ	MGP_PWKPhJ_G0015156	protein coding gene	Chr1:50164190-50184424 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0014936	protein coding gene	Chr1:51944650-51970696 (+)
WSB/EiJ	MGP_WSBEiJ_G0015433	protein coding gene	Chr1:52087545-52114180 (+)

Homology

• Gene Tree
  Gm28778
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving Gm28778
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• UniProt
  2

• Ensembl
  ENSMUSG00000100679 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000100679	Ensembl Gene Model | MGI Sequence Detail	29233	C57BL/6J
transcript	ENSMUST00000190734	Ensembl | MGI Sequence Detail	1675	Not Applicable
polypeptide	ENSMUSP00000141087	Ensembl | MGI Sequence Detail	529	Not Applicable

Protein
Information

• UniProt
  2 Sequences
• EC
  2.3.1.234
• InterPro Domains
  IPR043129 ATPase, nucleotide binding domain
  IPR000905 Gcp-like domain
  IPR017861 Kae1/TsaD family
  IPR007203 ORMDL family
  IPR022450 tRNA N6-adenosine threonylcarbamoyltransferase, TsaD

References

• Summaries
  All 7

  Phenotypes 4
• Earliest
  J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
• Latest
  J:7938 Juriloff DM, et al., Genetic and developmental studies of a new mouse mutation that produces otocephaly. J Craniofac Genet Dev Biol. 1985;5(2):121-45

TSS for Gm28778:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr6688	Chr1:53336255-53336283 (+)	-1 bp
Tssr6689	Chr1:53336306-53336315 (+)	41 bp