Gm28777 Gene Detail

Summary

• Symbol
  Gm28777
• Name
  predicted gene 28777

• Feature Type
  lncRNA gene
• IDs
  MGI:5579483
  NCBI Gene: 105243925
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr1:53235272-53236854 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, Syntenic

Strain
Comparison

• SNPs within 2kb
  57 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5579483	lncRNA gene	Chr1:53235272-53236854 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0002681	antisense lncRNA gene	Chr1:52727033-52728615 (+)
A/J	MGP_AJ_G0002657	antisense lncRNA gene	Chr1:50956203-50957785 (+)
AKR/J	MGP_AKRJ_G0002637	antisense lncRNA gene	Chr1:52057782-52059364 (+)
BALB/cJ	MGP_BALBcJ_G0002643	antisense lncRNA gene	Chr1:50781869-50783451 (+)
C3H/HeJ	MGP_C3HHeJ_G0002603	antisense lncRNA gene	Chr1:52432060-52433642 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0002787	antisense lncRNA gene	Chr1:54922042-54923623 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0002332	antisense lncRNA gene	Chr1:40935389-40936930 (-)
CAST/EiJ	MGP_CASTEiJ_G0002576	antisense lncRNA gene	Chr1:51938764-51940337 (+)
CBA/J	MGP_CBAJ_G0002598	antisense lncRNA gene	Chr1:56402593-56404175 (+)
DBA/2J	MGP_DBA2J_G0002603	antisense lncRNA gene	Chr1:50221568-50223150 (+)
FVB/NJ	MGP_FVBNJ_G0002623	antisense lncRNA gene	Chr1:49687000-49688582 (+)
LP/J	MGP_LPJ_G0002683	antisense lncRNA gene	Chr1:53155300-53156882 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0002614	antisense lncRNA gene	Chr1:59483300-59484882 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0002792	antisense lncRNA gene	Chr1:52164202-52165786 (+)
PWK/PhJ	MGP_PWKPhJ_G0002533	antisense lncRNA gene	Chr1:50061494-50063077 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0002487	antisense lncRNA gene	Chr1:51831208-51832772 (+)
WSB/EiJ	MGP_WSBEiJ_G0002605	antisense lncRNA gene	Chr1:51987801-51989386 (+)

Homology

• Gene Tree
  Gm28777
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving Gm28777
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706
• cDNA Data
  2

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000100763 (Evidence)
• NCBI Gene
  105243925

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000100763	Ensembl Gene Model | MGI Sequence Detail	1583	C57BL/6J
transcript	ENSMUST00000191402	Ensembl | MGI Sequence Detail	535	Not Applicable

Molecular
Reagents

• All nucleic 2

  cDNA 2

References

• Summaries
  All 9

  Phenotypes 4
• Earliest
  J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
• Latest
  J:7938 Juriloff DM, et al., Genetic and developmental studies of a new mouse mutation that produces otocephaly. J Craniofac Genet Dev Biol. 1985;5(2):121-45