Tmem167-ps1 Pseudogene Detail

Summary

• Symbol
  Tmem167-ps1
• Name
  transmembrane protein 167, pseudogene 1
• Synonyms
  Gm28601

• Feature Type
  pseudogene
  BioType Conflict
  
• IDs
  MGI:5579307
  NCBI Gene: 101055841
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr7:13453618-13453831 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 7, Syntenic

Strain
Comparison

• SNPs within 2kb
  21 from dbSNP Build 142
• Strain Annotations
  14

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5579307	pseudogene	Chr7:13453496-13454216 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0013814	pseudogene	Chr7:11488152-11488365 (+)
A/J	MGP_AJ_G0013810	pseudogene	Chr7:11102126-11102339 (+)
AKR/J	no annotation
BALB/cJ	MGP_BALBcJ_G0013792	pseudogene	Chr7:11228663-11228876 (+)
C3H/HeJ	MGP_C3HHeJ_G0013616	pseudogene	Chr7:11550618-11550831 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0014187	pseudogene	Chr7:11915852-11916065 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	MGP_CASTEiJ_G0013297	pseudogene	Chr7:8995267-8995480 (+)
CBA/J	MGP_CBAJ_G0013594	pseudogene	Chr7:12113258-12113471 (-)
DBA/2J	MGP_DBA2J_G0013675	pseudogene	Chr7:10977611-10977824 (+)
FVB/NJ	no annotation
LP/J	MGP_LPJ_G0013757	pseudogene	Chr7:11579352-11579565 (+)
NOD/ShiLtJ	no annotation
NZO/HlLtJ	MGP_NZOHlLtJ_G0014168	pseudogene	Chr7:11150520-11150733 (+)
PWK/PhJ	MGP_PWKPhJ_G0013108	pseudogene	Chr7:9282286-9282499 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0012888	pseudogene	Chr7:7113067-7113280 (+)
WSB/EiJ	MGP_WSBEiJ_G0013359	pseudogene	Chr7:11164395-11164608 (+)

Homology

• Gene Tree
  Tmem167-ps1
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  19
• RefSeq
  2

• Ensembl
  ENSMUSG00000100468 (Evidence)
• NCBI Gene
  101055841

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000100468	Ensembl Gene Model | MGI Sequence Detail	214	C57BL/6J
transcript	ENSMUST00000191236	Ensembl | MGI Sequence Detail	214	Not Applicable
polypeptide	XP_036009505	RefSeq | MGI Sequence Detail	111	C57BL/6J

References

• Summaries
  All 5
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;