Gm28523 Gene Detail

Summary

• Symbol
  Gm28523
• Name
  predicted gene 28523

• Feature Type
  lncRNA gene
• IDs
  MGI:5579229
  NCBI Gene: 102632597
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr6:141192646-141195735 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, Syntenic

Strain
Comparison

• SNPs within 2kb
  36 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5579229	lncRNA gene	Chr6:141190493-141196379 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0004383	antisense lncRNA gene	Chr6:145991801-145995401 (-)
A/J	MGP_AJ_G0004360	antisense lncRNA gene	Chr6:140217907-140220965 (-)
AKR/J	MGP_AKRJ_G0004342	antisense lncRNA gene	Chr6:144418411-144421375 (-)
BALB/cJ	MGP_BALBcJ_G0004346	antisense lncRNA gene	Chr6:140048360-140051710 (-)
C3H/HeJ	MGP_C3HHeJ_G0004295	antisense lncRNA gene	Chr6:144486716-144490503 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0004496	antisense lncRNA gene	Chr6:149986158-149989111 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003956	antisense lncRNA gene	Chr6:139067965-139070970 (-)
CAST/EiJ	MGP_CASTEiJ_G0004255	antisense lncRNA gene	Chr6:144034495-144038518 (-)
CBA/J	MGP_CBAJ_G0004289	antisense lncRNA gene	Chr6:155714618-155719735 (-)
DBA/2J	MGP_DBA2J_G0004304	antisense lncRNA gene	Chr6:139059025-139062398 (-)
FVB/NJ	MGP_FVBNJ_G0004321	antisense lncRNA gene	Chr6:137848988-137852299 (-)
LP/J	MGP_LPJ_G0004383	antisense lncRNA gene	Chr6:146139637-146142572 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0004312	antisense lncRNA gene	Chr6:159556109-159560412 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0004493	antisense lncRNA gene	Chr6:144251155-144255867 (-)
PWK/PhJ	MGP_PWKPhJ_G0004208	antisense lncRNA gene	Chr6:137561568-137565135 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0004150	antisense lncRNA gene	Chr6:142471054-142474085 (-)
WSB/EiJ	MGP_WSBEiJ_G0004294	antisense lncRNA gene	Chr6:144899180-144902173 (-)

Homology

• Gene Tree
  Gm28523
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000100707 (Evidence)
• NCBI Gene
  102632597

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000100707	Ensembl Gene Model | MGI Sequence Detail	3090	C57BL/6J
transcript	ENSMUST00000190040	Ensembl | MGI Sequence Detail	1588	Not Applicable

References

• Summaries
  All 4
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;

TSS for Gm28523:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr63929	Chr6:141195540-141195621 (-)	154 bp