Gm28294 Gene Detail

Summary

• Symbol
  Gm28294
• Name
  predicted gene 28294

• Feature Type
  lncRNA gene
• IDs
  MGI:5579000
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr1:75228966-75234071 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, Syntenic

Strain
Comparison

• SNPs within 2kb
  34 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5579000	lncRNA gene	Chr1:75228966-75234071 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0002703	antisense lncRNA gene	Chr1:75816279-75821388 (+)
A/J	MGP_AJ_G0002679	antisense lncRNA gene	Chr1:73174922-73179966 (+)
AKR/J	MGP_AKRJ_G0002659	antisense lncRNA gene	Chr1:75205536-75210632 (+)
BALB/cJ	MGP_BALBcJ_G0002665	antisense lncRNA gene	Chr1:73235682-73240787 (+)
C3H/HeJ	MGP_C3HHeJ_G0002625	antisense lncRNA gene	Chr1:75537955-75543060 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0002809	antisense lncRNA gene	Chr1:78769271-78774376 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0002356	antisense lncRNA gene	Chr1:68736521-68741649 (+)
CAST/EiJ	MGP_CASTEiJ_G0002597	antisense lncRNA gene	Chr1:74879627-74886253 (+)
CBA/J	MGP_CBAJ_G0002620	antisense lncRNA gene	Chr1:81325584-81330686 (+)
DBA/2J	MGP_DBA2J_G0002625	antisense lncRNA gene	Chr1:72492874-72497983 (+)
FVB/NJ	MGP_FVBNJ_G0002645	antisense lncRNA gene	Chr1:71696560-71701667 (+)
LP/J	MGP_LPJ_G0002705	antisense lncRNA gene	Chr1:76941840-76948128 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0002635	antisense lncRNA gene	Chr1:84683674-84688577 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0002814	antisense lncRNA gene	Chr1:75275085-75280194 (+)
PWK/PhJ	MGP_PWKPhJ_G0002555	antisense lncRNA gene	Chr1:71964781-71969862 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0002509	antisense lncRNA gene	Chr1:74637109-74643580 (+)
WSB/EiJ	MGP_WSBEiJ_G0002627	antisense lncRNA gene	Chr1:75086911-75092002 (+)

Homology

• Gene Tree
  Gm28294
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  9 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  1
• Radiation induced
  2
• Genomic Mutations
  3 involving Gm28294
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000101840 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000101840	Ensembl Gene Model | MGI Sequence Detail	5106	C57BL/6J
transcript	ENSMUST00000191154	Ensembl | MGI Sequence Detail	386	Not Applicable

References

• Summaries
  All 11

  Phenotypes 9
• Earliest
  J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
• Latest
  J:41878 Zoltewicz JS, et al., oto is a homeotic locus with a role in anteroposterior development that is partially redundant with Lim1. Development. 1999 Nov;126(22):5085-95