Gm28228 Gene Detail

Summary

• Symbol
  Gm28228
• Name
  predicted gene 28228

• Feature Type
  lncRNA gene
• IDs
  MGI:5578934
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr19:28066256-28067164 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 19, Syntenic

Strain
Comparison

• SNPs within 2kb
  40 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5578934	lncRNA gene	Chr19:28066256-28067164 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0005822	lincRNA gene	Chr19:26480153-26481061 (+)
A/J	MGP_AJ_G0005813	lincRNA gene	Chr19:25125762-25126666 (+)
AKR/J	MGP_AKRJ_G0005789	lincRNA gene	Chr19:26075861-26076769 (+)
BALB/cJ	MGP_BALBcJ_G0005792	lincRNA gene	Chr19:25165105-25166013 (+)
C3H/HeJ	MGP_C3HHeJ_G0005740	lincRNA gene	Chr19:26012072-26012980 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0005952	lincRNA gene	Chr19:27235475-27236383 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0005293	lincRNA gene	Chr19:25127352-25128251 (+)
CAST/EiJ	MGP_CASTEiJ_G0005678	lincRNA gene	Chr19:25827492-25828396 (+)
CBA/J	MGP_CBAJ_G0005725	lincRNA gene	Chr19:28507087-28507995 (+)
DBA/2J	MGP_DBA2J_G0005745	lincRNA gene	Chr19:25100967-25101875 (+)
FVB/NJ	MGP_FVBNJ_G0005772	lincRNA gene	Chr19:24945466-24946374 (+)
LP/J	MGP_LPJ_G0005826	lincRNA gene	Chr19:26471606-26472514 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0005758	lincRNA gene	Chr19:28476500-28477408 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0005950	lincRNA gene	Chr19:26066277-26067185 (+)
PWK/PhJ	MGP_PWKPhJ_G0005625	lincRNA gene	Chr19:24745388-24746292 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0005539	lincRNA gene	Chr19:25308983-25309888 (+)
WSB/EiJ	MGP_WSBEiJ_G0005732	lincRNA gene	Chr19:26107816-26108724 (+)

Homology

• Gene Tree
  Gm28228
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000101084 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000101084	Ensembl Gene Model | MGI Sequence Detail	909	C57BL/6J
transcript	ENSMUST00000186880	Ensembl | MGI Sequence Detail	632	Not Applicable

References

• Summaries
  All 2
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;