Gm28154 Gene Detail

Summary

• Symbol
  Gm28154
• Name
  predicted gene 28154

• Feature Type
  lncRNA gene
• IDs
  MGI:5578860
  NCBI Gene: 102634738
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr1:17685308-17711305 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, Syntenic

Strain
Comparison

• SNPs within 2kb
  253 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5578860	lncRNA gene	Chr1:17685307-17711606 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0002648	antisense lncRNA gene	Chr1:15163611-15197930 (-)
A/J	MGP_AJ_G0002624	antisense lncRNA gene	Chr1:14965457-14991173 (-)
AKR/J	MGP_AKRJ_G0002604	antisense lncRNA gene	Chr1:14969273-14995217 (-)
BALB/cJ	MGP_BALBcJ_G0002610	antisense lncRNA gene	Chr1:14669873-14695934 (-)
C3H/HeJ	MGP_C3HHeJ_G0002570	antisense lncRNA gene	Chr1:15031170-15060101 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0002754	antisense lncRNA gene	Chr1:15851309-15878432 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0002302	antisense lncRNA gene	Chr1:13455859-13488705 (-)
CAST/EiJ	MGP_CASTEiJ_G0002544	antisense lncRNA gene	Chr1:15076798-15104224 (-)
CBA/J	MGP_CBAJ_G0002565	antisense lncRNA gene	Chr1:16187290-16223498 (-)
DBA/2J	MGP_DBA2J_G0002570	antisense lncRNA gene	Chr1:14546414-14574822 (-)
FVB/NJ	MGP_FVBNJ_G0002590	antisense lncRNA gene	Chr1:14314441-14340234 (-)
LP/J	MGP_LPJ_G0002650	antisense lncRNA gene	Chr1:15361394-15393828 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0002581	antisense lncRNA gene	Chr1:16864203-16896509 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0002759	antisense lncRNA gene	Chr1:14959692-14985417 (-)
PWK/PhJ	MGP_PWKPhJ_G0002501	antisense lncRNA gene	Chr1:14297238-14328525 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0002454	antisense lncRNA gene	Chr1:15070755-15100545 (-)
WSB/EiJ	MGP_WSBEiJ_G0002573	antisense lncRNA gene	Chr1:14896575-14922703 (-)

Homology

• Gene Tree
  Gm28154
  

Expression

• Assay Results
  706
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  33
• RefSeq
  11

• Ensembl
  ENSMUSG00000100053 (Evidence)
• NCBI Gene
  102634738

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000100053	Ensembl Gene Model | MGI Sequence Detail	25998	C57BL/6J
transcript	ENSMUST00000186267	Ensembl | MGI Sequence Detail	4218	Not Applicable

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 5
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;