Gm28118 Pseudogene Detail

Summary

• Symbol
  Gm28118
• Name
  predicted gene 28118

• Feature Type
  pseudogene
• IDs
  MGI:5578824
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr17:11764392-11764685 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 17, Syntenic

Strain
Comparison

• SNPs within 2kb
  54 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5578824	pseudogene	Chr17:11764392-11764685 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0011322	pseudogene	Chr17:9158785-9159078 (-)
A/J	MGP_AJ_G0011307	pseudogene	Chr17:9050210-9050503 (-)
AKR/J	MGP_AKRJ_G0011268	pseudogene	Chr17:8834918-8835211 (-)
BALB/cJ	MGP_BALBcJ_G0011280	pseudogene	Chr17:8813191-8813484 (-)
C3H/HeJ	MGP_C3HHeJ_G0011171	pseudogene	Chr17:9100482-9100775 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0011572	pseudogene	Chr17:9517817-9518110 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0010149	pseudogene	Chr17:5384759-5385051 (+)
CAST/EiJ	MGP_CASTEiJ_G0010994	pseudogene	Chr17:9136702-9136995 (-)
CBA/J	MGP_CBAJ_G0011149	pseudogene	Chr17:9892644-9892937 (-)
DBA/2J	MGP_DBA2J_G0011197	pseudogene	Chr17:8681451-8681744 (-)
FVB/NJ	MGP_FVBNJ_G0011201	pseudogene	Chr17:8612931-8613224 (-)
LP/J	MGP_LPJ_G0011291	pseudogene	Chr17:8981766-8982059 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0011196	pseudogene	Chr17:9540482-9540775 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0011551	pseudogene	Chr17:9109029-9109322 (-)
PWK/PhJ	MGP_PWKPhJ_G0010864	pseudogene	Chr17:8367901-8368302 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0010691	pseudogene	Chr17:8484982-8485275 (-)
WSB/EiJ	MGP_WSBEiJ_G0011035	pseudogene	Chr17:9425072-9425365 (-)

Homology

• Gene Tree
  Gm28118
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000099618 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000099618	Ensembl Gene Model | MGI Sequence Detail	294	C57BL/6J
transcript	ENSMUST00000185957	Ensembl | MGI Sequence Detail	294	Not Applicable

References

• Summaries
  All 2
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;