Mannr Gene Detail

Summary

• Symbol
  Mannr
• Name
  Mecom adjacent non-protein coding RNA
• Synonyms
  Manr

• Feature Type
  lncRNA gene
• IDs
  MGI:5564803
  NCBI Gene: 102636083
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr3:29945166-29978340 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, Syntenic

Strain
Comparison

• SNPs within 2kb
  196 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5564803	lncRNA gene	Chr3:29945136-29978348 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0006144	lincRNA gene	Chr3:27345803-27378559 (+)
A/J	MGP_AJ_G0006135	lincRNA gene	Chr3:27017888-27049177 (+)
AKR/J	MGP_AKRJ_G0006111	lincRNA gene	Chr3:27413749-27456052 (+)
BALB/cJ	MGP_BALBcJ_G0006112	lincRNA gene	Chr3:26705040-26747575 (+)
C3H/HeJ	MGP_C3HHeJ_G0006061	lincRNA gene	Chr3:27459452-27485989 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0006273	lincRNA gene	Chr3:28838047-28878630 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	MGP_CASTEiJ_G0005996	lincRNA gene	Chr3:27309469-27348008 (+)
CBA/J	MGP_CBAJ_G0006046	lincRNA gene	Chr3:29556123-29589238 (+)
DBA/2J	MGP_DBA2J_G0006066	lincRNA gene	Chr3:26580662-26613781 (+)
FVB/NJ	MGP_FVBNJ_G0006090	lincRNA gene	Chr3:26035369-26062015 (+)
LP/J	MGP_LPJ_G0006147	lincRNA gene	Chr3:28025042-28069434 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0006079	lincRNA gene	Chr3:32160544-32198818 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0006277	lincRNA gene	Chr3:27156414-27191267 (+)
PWK/PhJ	MGP_PWKPhJ_G0005941	lincRNA gene	Chr3:26068476-26093712 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0005850	lincRNA gene	Chr3:26664851-26691378 (+)
WSB/EiJ	MGP_WSBEiJ_G0006044	lincRNA gene	Chr3:27244903-27280015 (+)

Homology

• Gene Tree
  Mannr
  

Human Diseases

• References
  1 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype from 1 allele in 1 genetic background
  5 phenotype references
  

• All Mutations and Alleles
  2
• Radiation induced
  1
• Targeted
  1
• Genomic Mutations
  1 involving Mannr
• Find Mice (IMSR)
  0 strains or lines available

Mice homozygous for a null allele are viable.

Gene Ontology
(GO)
Classifications

• All GO Annotations
  1
• GO References
  1

Expression

• Assay Results
  707
• Tissues
  1
• cDNA Data
  1
• Literature Summary
  2

Images

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  25
• RefSeq
  1

• Ensembl
  ENSMUSG00000102590 (Evidence)
• NCBI Gene
  102636083

Representative Sequences			Length	Strain/Species
genomic	102636083	NCBI Gene Model | MGI Sequence Detail	33175	C57BL/6J
transcript	NR_110437	RefSeq | MGI Sequence Detail	1435	ZRU/MplStud

Protein
Information

• EC
  102636083

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 10

  Developmental Gene Expression 2

  Diseases 1

  Gene Ontology 1

  Phenotypes 5
• Earliest
  J:70677 Cook SA, et al., Mouse paracentric inversion In(3)55Rk mutates the urate oxidase gene. Cytogenet Cell Genet. 2001;93(1-2):77-82
• Latest
  J:302829 Lu J, et al., Mouse models for human hyperuricaemia: a critical review. Nat Rev Rheumatol. 2019 Jul;15(7):413-426

TSS for Mannr:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr28677	Chr3:29945157-29945180 (+)	3 bp