Mir6516 Gene Detail

Summary

• Symbol
  Mir6516
• Name
  microRNA 6516
• Synonyms
  mmu-mir-6516

• Feature Type
  miRNA gene
• IDs
  MGI:5562736
  NCBI Gene: 102465258
• Alliance
  gene page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr11:116968174-116968283 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  7 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5562736	miRNA gene	Chr11:116968174-116968283 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0007894	miRNA gene	Chr11:121273117-121273226 (+)
A/J	MGP_AJ_G0007888	miRNA gene	Chr11:115916496-115916605 (+)
AKR/J	MGP_AKRJ_G0007863	miRNA gene	Chr11:119453257-119453366 (+)
BALB/cJ	MGP_BALBcJ_G0007867	miRNA gene	Chr11:116296793-116296902 (+)
C3H/HeJ	MGP_C3HHeJ_G0007813	miRNA gene	Chr11:119730236-119730345 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0008047	miRNA gene	Chr11:124993039-124993148 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0007184	miRNA gene	Chr11:112941319-112941426 (+)
CAST/EiJ	MGP_CASTEiJ_G0007706	miRNA gene	Chr11:121150679-121150788 (+)
CBA/J	MGP_CBAJ_G0007784	miRNA gene	Chr11:129886215-129886324 (+)
DBA/2J	MGP_DBA2J_G0007819	miRNA gene	Chr11:115327210-115327319 (+)
FVB/NJ	MGP_FVBNJ_G0007838	miRNA gene	Chr11:114926352-114926461 (+)
LP/J	MGP_LPJ_G0007897	miRNA gene	Chr11:121613993-121614102 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0007808	miRNA gene	Chr11:128931070-128931179 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0008041	miRNA gene	Chr11:120089225-120089334 (+)
PWK/PhJ	MGP_PWKPhJ_G0007632	miRNA gene	Chr11:116669119-116669228 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0007528	miRNA gene	Chr11:119819536-119819645 (+)
WSB/EiJ	MGP_WSBEiJ_G0007774	miRNA gene	Chr11:120048721-120048830 (+)

Homology

• Gene Tree
  Mir6516
  

Expression

• Assay Results
  672

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000104740 (Evidence)
• NCBI Gene
  102465258

Representative Sequences			Length	Strain/Species
genomic	102465258	NCBI Gene Model | MGI Sequence Detail	110	C57BL/6J
transcript	NR_105853	RefSeq | MGI Sequence Detail	110	C57BL/6

Other Database
Links

miRBase

MI0022266

References

• Summaries
  All 4
• Earliest
  J:105741 Griffiths-Jones S, et al., miRBase: microRNA sequences, targets and gene nomenclature. Nucleic Acids Res. 2006 Jan 1;34(Database issue):D140-4

TSS for Mir6516:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr106013	Chr11:116967998-116968031 (+)	-159 bp
Tssr106014	Chr11:116968065-116968071 (+)	-106 bp