Mir5615-1 Gene Detail

Summary

• Symbol
  Mir5615-1
• Name
  microRNA 5615-1
• Synonyms
  mmu-mir-5615-1

• Feature Type
  miRNA gene
• IDs
  MGI:5562727
  NCBI Gene: 100885825
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr10:80940448-80940507 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  72 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5562727	miRNA gene	Chr10:80940448-80940507 (-)
129S1/SvImJ	ENSMUSG00200050804	miRNA gene	Chr10:77567611-77567670 (-)
A/J	ENSMUSG00195050018	miRNA gene	Chr10:77962859-77962918 (-)
AKR/J	ENSMUSG00220048790	miRNA gene	Chr10:77560528-77560587 (-)
BALB/cJ	ENSMUSG00180053236	miRNA gene	Chr10:77973297-77973356 (-)
C3H/HeJ	ENSMUSG00175052687	miRNA gene	Chr10:77844056-77844115 (-)
C57BL/6NJ	ENSMUSG00215053334	miRNA gene	Chr10:77585912-77585971 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0007039	miRNA gene	Chr10:75103896-75103955 (-)
CAST/EiJ	ENSTCUG00005051755	miRNA gene	Chr10:77468203-77468262 (-)
CBA/J	ENSMUSG00210050314	miRNA gene	Chr10:77700082-77700141 (-)
DBA/2J	ENSMUSG00185053473	miRNA gene	Chr10:78042510-78042569 (-)
FVB/NJ	ENSMUSG00205051644	miRNA gene	Chr10:77755321-77755380 (-)
JF1/MsJ	ENSUMUG00000055824	miRNA gene	Chr10:79270215-79270274 (-)
LP/J	ENSMUSG00230051094	miRNA gene	Chr10:79812111-79812170 (-)
NOD/ShiLtJ	ENSMUSG00190052398	miRNA gene	Chr10:77956218-77956277 (-)
NZO/HlLtJ	ENSMUSG00225053329	miRNA gene	Chr10:84098650-84098709 (-)
PWK/PhJ	ENSLUMG00010051996	miRNA gene	Chr10:77634156-77634215 (-)
SPRET/EiJ	ENSMSPG00010048143	miRNA gene	Chr10:79244879-79244938 (-)
WSB/EiJ	ENSIUOG00005051280	miRNA gene	Chr10:77696880-77696939 (-)

Homology

• Gene Tree
  Mir5615-1
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Mir5615-1
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  24
• RefSeq
  1

• Ensembl
  ENSMUSG00000106347 (Evidence)
• NCBI Gene
  100885825

Representative Sequences			Length	Strain/Species
genomic	100885825	NCBI Gene Model | MGI Sequence Detail	60	C57BL/6J
transcript	NR_049186	RefSeq | MGI Sequence Detail	60	ZRU/MplStud

Other Database
Links

miRBase

MI0019181

References

• Summaries
  All 10

  Phenotypes 5
• Earliest
  J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
• Latest
  J:105741 Griffiths-Jones S, et al., miRBase: microRNA sequences, targets and gene nomenclature. Nucleic Acids Res. 2006 Jan 1;34(Database issue):D140-4

TSS for Mir5615-1:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr98559	Chr10:80941675-80941717 (-)	-1,189 bp