Mir6906 Gene Detail

Summary

• Symbol
  Mir6906
• Name
  microRNA 6906
• Synonyms
  mmu-mir-6906

• Feature Type
  miRNA gene
• IDs
  MGI:5562725
  NCBI Gene: 102465546
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr10:59962598-59962655 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  7 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5562725	miRNA gene	Chr10:59962598-59962655 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0007711	miRNA gene	Chr10:59346709-59346766 (+)
A/J	MGP_AJ_G0007707	miRNA gene	Chr10:57598757-57598814 (+)
AKR/J	MGP_AKRJ_G0007681	miRNA gene	Chr10:59101997-59102054 (+)
BALB/cJ	MGP_BALBcJ_G0007684	miRNA gene	Chr10:57686023-57686080 (+)
C3H/HeJ	MGP_C3HHeJ_G0007630	miRNA gene	Chr10:59015051-59015108 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0007860	miRNA gene	Chr10:61462432-61462489 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0007019	miRNA gene	Chr10:54602440-54602497 (+)
CAST/EiJ	MGP_CASTEiJ_G0007527	miRNA gene	Chr10:58954954-58955011 (+)
CBA/J	MGP_CBAJ_G0007603	miRNA gene	Chr10:63678114-63678171 (+)
DBA/2J	MGP_DBA2J_G0007637	miRNA gene	Chr10:56905604-56905661 (+)
FVB/NJ	MGP_FVBNJ_G0007654	miRNA gene	Chr10:56138956-56139013 (+)
LP/J	MGP_LPJ_G0007716	miRNA gene	Chr10:59720843-59720900 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0007627	miRNA gene	Chr10:66170696-66170753 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0007859	miRNA gene	Chr10:58905352-58905409 (+)
PWK/PhJ	MGP_PWKPhJ_G0007459	miRNA gene	Chr10:56704741-56704798 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0007357	miRNA gene	Chr10:58238805-58238862 (+)
WSB/EiJ	MGP_WSBEiJ_G0007592	miRNA gene	Chr10:58817802-58817859 (+)

Homology

• Gene Tree
  Mir6906
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  6 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving Mir6906
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000105468 (Evidence)
• NCBI Gene
  102465546

Representative Sequences			Length	Strain/Species
genomic	102465546	NCBI Gene Model | MGI Sequence Detail	58	C57BL/6J
transcript	NR_105871	RefSeq | MGI Sequence Detail	58	ZRU/MplStud

Other Database
Links

miRBase

MI0022753

References

• Summaries
  All 10

  Phenotypes 6
• Earliest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
• Latest
  J:105741 Griffiths-Jones S, et al., miRBase: microRNA sequences, targets and gene nomenclature. Nucleic Acids Res. 2006 Jan 1;34(Database issue):D140-4

TSS for Mir6906:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr93523	Chr10:59961946-59961976 (+)	-637 bp