Mir6989 Gene Detail

Summary

• Symbol
  Mir6989
• Name
  microRNA 6989
• Synonyms
  mmu-mir-6989

• Feature Type
  miRNA gene
• IDs
  MGI:5531267
  NCBI Gene: 102465598
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr19:6396510-6396574 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 19, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  23 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5531267	miRNA gene	Chr19:6396510-6396574 (+)
129S1/SvImJ	ENSMUSG00200052968	miRNA gene	Chr19:3159553-3159617 (+)
A/J	ENSMUSG00195053142	miRNA gene	Chr19:3567347-3567411 (+)
AKR/J	ENSMUSG00220050966	miRNA gene	Chr19:3333353-3333417 (+)
BALB/cJ	ENSMUSG00180051409	miRNA gene	Chr19:3934931-3934995 (+)
C3H/HeJ	ENSMUSG00175014440	miRNA gene	Chr19:3185088-3185152 (+)
C57BL/6NJ	ENSMUSG00215048346	miRNA gene	Chr19:3397906-3397970 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0007621	miRNA gene	Chr19:3133371-3133435 (+)
CAST/EiJ	ENSTCUG00005044458	miRNA gene	Chr19:3317812-3317876 (+)
CBA/J	ENSMUSG00210050577	miRNA gene	Chr19:3188965-3189029 (+)
DBA/2J	ENSMUSG00185052448	miRNA gene	Chr19:3565441-3565505 (+)
FVB/NJ	ENSMUSG00205053445	miRNA gene	Chr19:3566316-3566380 (+)
JF1/MsJ	ENSUMUG00000056967	miRNA gene	Chr19:3534246-3534310 (+)
LP/J	ENSMUSG00230054206	miRNA gene	Chr19:4466419-4466483 (+)
NOD/ShiLtJ	ENSMUSG00190052661	miRNA gene	Chr19:3094670-3094734 (+)
NZO/HlLtJ	ENSMUSG00225027119	miRNA gene	Chr19:8175231-8175295 (+)
PWK/PhJ	ENSLUMG00010008327	miRNA gene	Chr19:3300396-3300460 (+)
SPRET/EiJ	ENSMSPG00010051223	miRNA gene	Chr19:3293623-3293687 (+)
WSB/EiJ	ENSIUOG00005051840	miRNA gene	Chr19:3207187-3207251 (+)

Homology

• Gene Tree
  Mir6989
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  1

• Ensembl
  ENSMUSG00000099230 (Evidence)
• NCBI Gene
  102465598

Representative Sequences			Length	Strain/Species
genomic	102465598	NCBI Gene Model | MGI Sequence Detail	65	C57BL/6J
transcript	NR_105955	RefSeq | MGI Sequence Detail	65	ZRU/MplStud

Other Database
Links

miRBase

MI0022837

References

• Summaries
  All 5
• Earliest
  J:105741 Griffiths-Jones S, et al., miRBase: microRNA sequences, targets and gene nomenclature. Nucleic Acids Res. 2006 Jan 1;34(Database issue):D140-4

TSS for Mir6989:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr154629	Chr19:6396441-6396455 (+)	-62 bp