Mir6409 Gene Detail

Summary

• Symbol
  Mir6409
• Name
  microRNA 6409
• Synonyms
  mmu-mir-6409

• Feature Type
  miRNA gene
• IDs
  MGI:5531169
  NCBI Gene: 102466646
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr10:75844760-75844851 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  126 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5531169	miRNA gene	Chr10:75844760-75844851 (+)
129S1/SvImJ	ENSMUSG00200050241	miRNA gene	Chr10:72546265-72546356 (+)
A/J	ENSMUSG00195051183	miRNA gene	Chr10:72858417-72858508 (+)
AKR/J	ENSMUSG00220048750	miRNA gene	Chr10:72518166-72518257 (+)
BALB/cJ	ENSMUSG00180053180	miRNA gene	Chr10:72872896-72872987 (+)
C3H/HeJ	ENSMUSG00175052978	miRNA gene	Chr10:72744193-72744284 (+)
C57BL/6NJ	ENSMUSG00215052974	miRNA gene	Chr10:72481800-72481891 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0007025	miRNA gene	Chr10:70043200-70043321 (+)
CAST/EiJ	ENSTCUG00005051628	miRNA gene	Chr10:72357753-72357844 (+)
CBA/J	ENSMUSG00210050425	miRNA gene	Chr10:72600387-72600478 (+)
DBA/2J	ENSMUSG00185054587	miRNA gene	Chr10:72942675-72942766 (+)
FVB/NJ	ENSMUSG00205050809	miRNA gene	Chr10:72635694-72635785 (+)
JF1/MsJ	ENSUMUG00000056444	miRNA gene	Chr10:74084087-74084178 (+)
LP/J	ENSMUSG00230051310	miRNA gene	Chr10:74712252-74712343 (+)
NOD/ShiLtJ	ENSMUSG00190052020	miRNA gene	Chr10:72920177-72920268 (+)
NZO/HlLtJ	ENSMUSG00225048321	miRNA gene	Chr10:79008725-79008816 (+)
PWK/PhJ	ENSLUMG00010051413	miRNA gene	Chr10:72478755-72478846 (+)
SPRET/EiJ	ENSMSPG00010048543	miRNA gene	Chr10:74277984-74278075 (+)
WSB/EiJ	ENSIUOG00005051650	miRNA gene	Chr10:72516826-72516917 (+)

Homology

• Gene Tree
  Mir6409
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Mir6409
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  1

• Ensembl
  ENSMUSG00000098817 (Evidence)
• NCBI Gene
  102466646

Representative Sequences			Length	Strain/Species
genomic	102466646	NCBI Gene Model | MGI Sequence Detail	92	C57BL/6J
transcript	NR_105836	RefSeq | MGI Sequence Detail	92	ZRU/MplStud

Other Database
Links

miRBase

MI0021946

References

• Summaries
  All 10

  Phenotypes 5
• Earliest
  J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
• Latest
  J:105741 Griffiths-Jones S, et al., miRBase: microRNA sequences, targets and gene nomenclature. Nucleic Acids Res. 2006 Jan 1;34(Database issue):D140-4