About   Help   FAQ
Mir6540 Gene Detail
Summary
  • Symbol
    Mir6540
  • Name
    microRNA 6540
  • Synonyms
    mmu-mir-6540
Location &
Maps
more
  • Sequence Map
    Chr16:42123725-42123832 bp, - strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 16, Syntenic
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    140 from dbSNP Build 142
  • Strain Annotations
    19
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_5531162
 miRNA gene Chr16:42123725-42123832 (-)
129S1/SvImJ ENSMUSG00200029692
 miRNA gene Chr16:39046147-39046254 (-)
A/J ENSMUSG00195011223
 miRNA gene Chr16:38585239-38585346 (-)
AKR/J ENSMUSG00220030070
 miRNA gene Chr16:38933518-38933625 (-)
BALB/cJ ENSMUSG00180013288
 miRNA gene Chr16:38791680-38791787 (-)
C3H/HeJ ENSMUSG00175033384
 miRNA gene Chr16:39062103-39062210 (-)
C57BL/6NJ ENSMUSG00215022413
 miRNA gene Chr16:38897532-38897639 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0007504
 miRNA gene Chr16:39239183-39239290 (-)
CAST/EiJ ENSTCUG00005032797
 miRNA gene Chr16:39344586-39344693 (-)
CBA/J ENSMUSG00210029204
 miRNA gene Chr16:39100003-39100110 (-)
DBA/2J ENSMUSG00185024877
 miRNA gene Chr16:38971545-38971652 (-)
FVB/NJ ENSMUSG00205028748
 miRNA gene Chr16:38914470-38914577 (-)
JF1/MsJ ENSUMUG00000040449
 miRNA gene Chr16:39202303-39202410 (-)
LP/J ENSMUSG00230029717
 miRNA gene Chr16:41574923-41575030 (-)
NOD/ShiLtJ ENSMUSG00190024475
 miRNA gene Chr16:39072300-39072407 (-)
NZO/HlLtJ ENSMUSG00225028917
 miRNA gene Chr16:44660845-44660952 (-)
PWK/PhJ ENSLUMG00010029830
 miRNA gene Chr16:39116259-39116366 (-)
SPRET/EiJ ENSMSPG00010017135
 miRNA gene Chr16:39150118-39150225 (-)
WSB/EiJ ENSIUOG00005027816
 miRNA gene Chr16:39223459-39223566 (-)



Homology
less
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    597
Sequences &
Gene Models
less
  • All Sequences
    24
  • RefSeq
    1
Representative SequencesLengthStrain/SpeciesFlank
genomic 102466172 NCBI Gene Model | MGI Sequence Detail 108 C57BL/6J ±  kb
transcript NR_105858 RefSeq | MGI Sequence Detail 108 ZRU/MplStud  
For the selected sequence
Other Database
Links
less
miRBase MI0022356
References
more
  • Summaries
    All 6
  • Earliest
    J:105741 Griffiths-Jones S, et al., miRBase: microRNA sequences, targets and gene nomenclature. Nucleic Acids Res. 2006 Jan 1;34(Database issue):D140-4
  • Latest
    J:357102 Kuchen S, et al., Regulation of microRNA expression and abundance during lymphopoiesis. Immunity. 2010 Jun 25;32(6):828-39
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
Warranty Disclaimer, Privacy Notice, Licensing, & Copyright
Send questions and comments to User Support. 		last database update
09/08/2026
MGI 6.24 		The Jackson Laboratory