Gm27579 Gene Detail

Summary

• Symbol
  Gm27579
• Name
  predicted gene, 27579

• Feature Type
  snRNA gene
• IDs
  MGI:5530961
  NCBI Gene: 115490035
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr4:84748424-84748486 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  20 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5530961	snRNA gene	Chr4:84748424-84748486 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0037913	snRNA gene	Chr4:97026191-97026253 (+)
A/J	MGP_AJ_G0037899	snRNA gene	Chr4:93618822-93618884 (+)
AKR/J	MGP_AKRJ_G0037838	snRNA gene	Chr4:95915970-95916032 (+)
BALB/cJ	MGP_BALBcJ_G0037885	snRNA gene	Chr4:93898774-93898836 (+)
C3H/HeJ	MGP_C3HHeJ_G0037559	snRNA gene	Chr4:96718462-96718524 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0038412	snRNA gene	Chr4:100730729-100730791 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0035295	snRNA gene	Chr4:89095124-89095186 (+)
CAST/EiJ	MGP_CASTEiJ_G0036717	snRNA gene	Chr4:94491690-94491752 (+)
CBA/J	MGP_CBAJ_G0037531	snRNA gene	Chr4:103773587-103773649 (+)
DBA/2J	MGP_DBA2J_G0037716	snRNA gene	Chr4:93409460-93409522 (+)
FVB/NJ	MGP_FVBNJ_G0037662	snRNA gene	Chr4:92267509-92267571 (+)
LP/J	MGP_LPJ_G0037761	snRNA gene	Chr4:97358251-97358313 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0037673	snRNA gene	Chr4:109562671-109562733 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0038524	snRNA gene	Chr4:96161010-96161072 (+)
PWK/PhJ	MGP_PWKPhJ_G0036408	snRNA gene	Chr4:91536979-91537041 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0036184	snRNA gene	Chr4:93608935-93608997 (+)
WSB/EiJ	MGP_WSBEiJ_G0036932	snRNA gene	Chr4:96272774-96272836 (+)

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  1
• Targeted
  1
• Genomic Mutations
  1 involving Gm27579
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20
• RefSeq
  1

• NCBI Gene
  115490035

Representative Sequences			Length	Strain/Species
genomic	115490035	NCBI Gene Model | MGI Sequence Detail	63	C57BL/6J
transcript	XR_004942316	RefSeq | MGI Sequence Detail	63	C57BL/6J

References

• Summaries
  All 6

  Phenotypes 3
• Earliest
  J:84714 Nishijima I, et al., Two new balancer chromosomes on mouse chromosome 4 to facilitate functional annotation of human chromosome 1p. Genesis. 2003 Jul;36(3):142-8
• Latest
  J:148802 Boles MK, et al., A mouse chromosome 4 balancer ENU-mutagenesis screen isolates eleven lethal lines. BMC Genet. 2009;10:12