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Mir6539 Gene Detail
Summary
  • Symbol
    Mir6539
  • Name
    microRNA 6539
  • Synonyms
    mmu-mir-6539
Location &
Maps
more
  • Sequence Map
    Chr14:68097085-68097194 bp, - strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 14, Syntenic
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    142 from dbSNP Build 142
  • Strain Annotations
    19
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_5530846
 miRNA gene Chr14:68097085-68097194 (-)
129S1/SvImJ ENSMUSG00200031926
 miRNA gene Chr14:56715053-56715162 (-)
A/J ENSMUSG00195015965
 miRNA gene Chr14:56880059-56880168 (-)
AKR/J ENSMUSG00220033062
 miRNA gene Chr14:56220662-56220771 (-)
BALB/cJ ENSMUSG00180036679
 miRNA gene Chr14:56496206-56496315 (-)
C3H/HeJ ENSMUSG00175041506
 miRNA gene Chr14:58251561-58251670 (-)
C57BL/6NJ ENSMUSG00215027820
 miRNA gene Chr14:56432385-56432494 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0007385
 miRNA gene Chr14:59011332-59011441 (-)
CAST/EiJ ENSTCUG00005039101
 miRNA gene Chr14:58145472-58145581 (-)
CBA/J ENSMUSG00210043075
 miRNA gene Chr14:56868698-56868807 (-)
DBA/2J ENSMUSG00185023949
 miRNA gene Chr14:62049365-62049474 (-)
FVB/NJ ENSMUSG00205037364
 miRNA gene Chr14:56382827-56382936 (-)
JF1/MsJ ENSUMUG00000044073
 miRNA gene Chr14:73222995-73223104 (-)
LP/J ENSMUSG00230017130
 miRNA gene Chr14:74078502-74078611 (-)
NOD/ShiLtJ ENSMUSG00190041499
 miRNA gene Chr14:56661899-56662008 (-)
NZO/HlLtJ ENSMUSG00225040326
 miRNA gene Chr14:64394728-64394837 (-)
PWK/PhJ ENSLUMG00010039691
 miRNA gene Chr14:56103276-56103385 (-)
SPRET/EiJ ENSMSPG00010036381
 miRNA gene Chr14:59599996-59600105 (-)
WSB/EiJ ENSIUOG00005040810
 miRNA gene Chr14:56118843-56118952 (-)



Homology
less
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    2 phenotype references
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    597
Sequences &
Gene Models
less
  • All Sequences
    24
  • RefSeq
    1
Representative SequencesLengthStrain/SpeciesFlank
genomic 102465310 NCBI Gene Model | MGI Sequence Detail 110 C57BL/6J ±  kb
transcript NR_105857 RefSeq | MGI Sequence Detail 110 ZRU/MplStud  
For the selected sequence
Other Database
Links
less
miRBase MI0022355
References
more
  • Summaries
    All 9
    Phenotypes 2
  • Earliest
    J:105741 Griffiths-Jones S, et al., miRBase: microRNA sequences, targets and gene nomenclature. Nucleic Acids Res. 2006 Jan 1;34(Database issue):D140-4
  • Latest
    J:390758 Wu F, et al., miR-6539 is a novel mediator of somatic cell reprogramming that represses the translation of Dnmt3b. J Reprod Dev. 2017 Aug 19;63(4):415-423
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
09/08/2026
MGI 6.24 		The Jackson Laboratory