Gm27196 Gene Detail

Summary

• Symbol
  Gm27196
• Name
  predicted gene 27196

• Feature Type
  lncRNA gene
• IDs
  MGI:5521039
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr2:26096714-26099295 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, Syntenic

Strain
Comparison

• SNPs within 2kb
  18 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5521039	lncRNA gene	Chr2:26096714-26099295 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0003525	antisense lncRNA gene	Chr2:24158410-24160990 (+)
A/J	MGP_AJ_G0003505	antisense lncRNA gene	Chr2:23224214-23226794 (+)
AKR/J	MGP_AKRJ_G0003484	antisense lncRNA gene	Chr2:23979527-23982107 (+)
BALB/cJ	MGP_BALBcJ_G0003494	antisense lncRNA gene	Chr2:23335350-23337931 (+)
C3H/HeJ	MGP_C3HHeJ_G0003442	antisense lncRNA gene	Chr2:23939438-23942019 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0003632	antisense lncRNA gene	Chr2:24930481-24933062 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003142	antisense lncRNA gene	Chr2:22106636-22109235 (+)
CAST/EiJ	MGP_CASTEiJ_G0003405	antisense lncRNA gene	Chr2:23809565-23812146 (+)
CBA/J	MGP_CBAJ_G0003439	antisense lncRNA gene	Chr2:25772051-25774632 (+)
DBA/2J	MGP_DBA2J_G0003447	antisense lncRNA gene	Chr2:23050056-23052636 (+)
FVB/NJ	MGP_FVBNJ_G0003466	antisense lncRNA gene	Chr2:22798649-22801230 (+)
LP/J	MGP_LPJ_G0003520	antisense lncRNA gene	Chr2:24093815-24096395 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0003454	antisense lncRNA gene	Chr2:25934398-25936979 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0003635	antisense lncRNA gene	Chr2:23941987-23944568 (+)
PWK/PhJ	MGP_PWKPhJ_G0003361	antisense lncRNA gene	Chr2:22849337-22851918 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0003306	antisense lncRNA gene	Chr2:24070637-24073221 (+)
WSB/EiJ	MGP_WSBEiJ_G0003440	antisense lncRNA gene	Chr2:24047423-24050004 (+)

Homology

• Gene Tree
  Gm27196
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000098977 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000098977	Ensembl Gene Model | MGI Sequence Detail	2582	C57BL/6J
transcript	ENSMUST00000184787	Ensembl | MGI Sequence Detail	2582	Not Applicable

References

• Summaries
  All 2
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;

TSS for Gm27196:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr16779	Chr2:26096687-26096698 (+)	-21 bp