Gm27002 Gene Detail

Summary

• Symbol
  Gm27002
• Name
  predicted gene, 27002

• Feature Type
  lncRNA gene
• IDs
  MGI:5504117
• Alliance
  gene page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr9:115029466-115032943 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 9, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  104 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5504117	lncRNA gene	Chr9:115029466-115032943 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0037098	sense intronic lncRNA gene	Chr9:117699267-117702772 (+)
A/J	MGP_AJ_G0037085	sense intronic lncRNA gene	Chr9:113358337-113361741 (+)
AKR/J	MGP_AKRJ_G0037033	sense intronic lncRNA gene	Chr9:116249727-116254885 (+)
BALB/cJ	MGP_BALBcJ_G0037076	sense intronic lncRNA gene	Chr9:113158572-113162668 (+)
C3H/HeJ	MGP_C3HHeJ_G0036763	sense intronic lncRNA gene	Chr9:116749224-116752643 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0037590	sense intronic lncRNA gene	Chr9:120915797-120921254 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0034632	sense intronic lncRNA gene	Chr9:110647470-110650805 (+)
CAST/EiJ	MGP_CASTEiJ_G0035950	sense intronic lncRNA gene	Chr9:116621419-116624895 (+)
CBA/J	MGP_CBAJ_G0036738	sense intronic lncRNA gene	Chr9:125465913-125472985 (+)
DBA/2J	MGP_DBA2J_G0036913	sense intronic lncRNA gene	Chr9:112839513-112842984 (+)
FVB/NJ	MGP_FVBNJ_G0036863	sense intronic lncRNA gene	Chr9:111668915-111672612 (+)
LP/J	MGP_LPJ_G0036961	sense intronic lncRNA gene	Chr9:118019584-118024687 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0036871	sense intronic lncRNA gene	Chr9:126640904-126644348 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0037707	sense intronic lncRNA gene	Chr9:116625935-116630425 (+)
PWK/PhJ	MGP_PWKPhJ_G0035644	sense intronic lncRNA gene	Chr9:113151245-113154830 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0035452	sense intronic lncRNA gene	Chr9:116698675-116701980 (+)
WSB/EiJ	MGP_WSBEiJ_G0036152	sense intronic lncRNA gene	Chr9:116513077-116518527 (+)

Homology

• Gene Tree
  Gm27002
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000097967 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000097967	Ensembl Gene Model | MGI Sequence Detail	3478	C57BL/6J
transcript	ENSMUST00000182789	Ensembl | MGI Sequence Detail	620	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm27002:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr87589	Chr9:115029463-115029506 (+)	19 bp
Tssr87590	Chr9:115029953-115029957 (+)	489 bp