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Platr11 Gene Detail
Summary
  • Symbol
    Platr11
  • Name
    pluripotency associated transcript 11
  • Synonyms
    Gm26975, linc1405, Meteor
  • Feature Type
    lncRNA gene
  • IDs
    MGI:5504090
    NCBI Gene: 102635911
  • Alliance
    gene page
  • Transcription Start Sites
    1 TSS
Location &
Maps
more
  • Sequence Map
    Chr9:118232905-118235217 bp, - strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 9, Syntenic
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    33 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_5504090
 lncRNA gene Chr9:118231085-118276245 (-)
129S1/SvImJ MGP_129S1SvImJ_G0007517
 lincRNA gene Chr9:121072068-121076345 (-)
A/J MGP_AJ_G0007512
 lincRNA gene Chr9:116604603-116606603 (-)
AKR/J MGP_AKRJ_G0007484
 lincRNA gene Chr9:119608660-119610661 (-)
BALB/cJ MGP_BALBcJ_G0007489
 lincRNA gene Chr9:116472401-116474401 (-)
C3H/HeJ MGP_C3HHeJ_G0007434
 lincRNA gene Chr9:120092581-120094581 (-)
C57BL/6NJ MGP_C57BL6NJ_G0007661
 lincRNA gene Chr9:124388354-124390356 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0006842
 lincRNA gene Chr9:113813641-113815810 (-)
CAST/EiJ MGP_CASTEiJ_G0007338
 lincRNA gene Chr9:120038039-120040005 (-)
CBA/J MGP_CBAJ_G0007415
 lincRNA gene Chr9:129050342-129052340 (-)
DBA/2J MGP_DBA2J_G0007441
 lincRNA gene Chr9:116051555-116053556 (-)
FVB/NJ MGP_FVBNJ_G0007457
 lincRNA gene Chr9:114886467-114888467 (-)
LP/J MGP_LPJ_G0007522
 lincRNA gene Chr9:121422994-121429050 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0007438
 lincRNA gene Chr9:130100554-130102554 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0007666
 lincRNA gene Chr9:119992424-119994426 (-)
PWK/PhJ MGP_PWKPhJ_G0007278
 lincRNA gene Chr9:116421230-116423287 (-)
SPRET/EiJ MGP_SPRETEiJ_G0007183
 lincRNA gene Chr9:120081380-120083399 (-)
WSB/EiJ MGP_WSBEiJ_G0007398
 lincRNA gene Chr9:119895286-119897284 (-)



Homology
less
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    2 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    1
  • GO References
    2
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
Sequences &
Gene Models
less
  • All Sequences
    23
  • RefSeq
    1
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000098161 Ensembl Gene Model | MGI Sequence Detail 2313 C57BL/6J ±  kb
transcript ENSMUST00000247002 Ensembl | MGI Sequence Detail 654 Not Applicable  
For the selected sequence
References
more
  • Summaries
    All 11
    Gene Ontology 2
    Phenotypes 2
  • Earliest
    J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14
  • Latest
    J:344809 Gil N, et al., Complex regulation of Eomes levels mediated through distinct functional features of the Meteor long non-coding RNA locus. Cell Rep. 2023 Jun 27;42(6):112569
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
04/16/2024
MGI 6.23 		The Jackson Laboratory