Gm26724 Gene Detail

Summary

• Symbol
  Gm26724
• Name
  predicted gene, 26724

• Feature Type
  lncRNA gene
• IDs
  MGI:5477218
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr17:27420006-27422045 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 17, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  33 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5477218	lncRNA gene	Chr17:27420006-27422045 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0005706	lincRNA gene	Chr17:26456760-26458799 (+)
A/J	MGP_AJ_G0005695	lincRNA gene	Chr17:25645205-25647244 (+)
AKR/J	MGP_AKRJ_G0005674	lincRNA gene	Chr17:25785122-25787161 (+)
BALB/cJ	MGP_BALBcJ_G0005675	lincRNA gene	Chr17:25888255-25890294 (+)
C3H/HeJ	MGP_C3HHeJ_G0005622	lincRNA gene	Chr17:26162567-26164606 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0005833	lincRNA gene	Chr17:27569243-27571282 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0005186	lincRNA gene	Chr17:23047681-23049688 (+)
CAST/EiJ	MGP_CASTEiJ_G0005564	lincRNA gene	Chr17:26094860-26096907 (+)
CBA/J	MGP_CBAJ_G0005610	lincRNA gene	Chr17:28528844-28530883 (+)
DBA/2J	MGP_DBA2J_G0005628	lincRNA gene	Chr17:25207423-25209462 (+)
FVB/NJ	MGP_FVBNJ_G0005654	lincRNA gene	Chr17:24988559-24990598 (+)
LP/J	MGP_LPJ_G0005709	lincRNA gene	Chr17:26702529-26704568 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0005639	lincRNA gene	Chr17:28038786-28040825 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0005833	lincRNA gene	Chr17:26163210-26165250 (+)
PWK/PhJ	MGP_PWKPhJ_G0005510	lincRNA gene	Chr17:24004119-24006156 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0005429	lincRNA gene	Chr17:24217904-24219926 (+)
WSB/EiJ	MGP_WSBEiJ_G0005616	lincRNA gene	Chr17:26187560-26189599 (+)

Homology

• Gene Tree
  Gm26724
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  1
• Radiation induced
  1
• Genomic Mutations
  1 involving Gm26724
• Find Mice (IMSR)
  1 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000097090 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000097090	Ensembl Gene Model | MGI Sequence Detail	2040	C57BL/6J
transcript	ENSMUST00000180434	Ensembl | MGI Sequence Detail	1650	Not Applicable

References

• Summaries
  All 4

  Phenotypes 3
• Earliest
  J:86784 Bergstrom DE, et al., Overlapping deletions spanning the proximal two-thirds of the mouse t complex. Mamm Genome. 2003 Dec;14(12):817-29
• Latest
  J:194116 Flachs P, et al., Interallelic and intergenic incompatibilities of the Prdm9 (Hst1) gene in mouse hybrid sterility. PLoS Genet. 2012;8(11):e1003044