Gm26709 Gene Detail

Summary

• Symbol
  Gm26709
• Name
  predicted gene, 26709

• Feature Type
  lncRNA gene
• IDs
  MGI:5477203
• Alliance
  gene page
• Transcription Start Sites
  6 TSS

Location &
Maps

• Sequence Map
  Chr12:72992581-73012705 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 12, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  166 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5477203	lncRNA gene	Chr12:72992581-73012705 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0037104	sense overlapping lncRNA gene	Chr12:72813089-72833091 (+)
A/J	MGP_AJ_G0037091	sense overlapping lncRNA gene	Chr12:70103878-70124128 (+)
AKR/J	MGP_AKRJ_G0037039	sense overlapping lncRNA gene	Chr12:72223691-72244731 (+)
BALB/cJ	MGP_BALBcJ_G0037082	sense overlapping lncRNA gene	Chr12:70579085-70599118 (+)
C3H/HeJ	MGP_C3HHeJ_G0036769	sense overlapping lncRNA gene	Chr12:72651884-72672416 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0037596	sense overlapping lncRNA gene	Chr12:75084015-75105532 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0034639	sense overlapping lncRNA gene	Chr12:67558138-67578236 (+)
CAST/EiJ	MGP_CASTEiJ_G0035956	sense overlapping lncRNA gene	Chr12:67440862-67463562 (+)
CBA/J	MGP_CBAJ_G0036744	sense overlapping lncRNA gene	Chr12:77924088-77945509 (+)
DBA/2J	MGP_DBA2J_G0036919	sense overlapping lncRNA gene	Chr12:69988773-70014741 (+)
FVB/NJ	MGP_FVBNJ_G0036869	sense overlapping lncRNA gene	Chr12:68849296-68869143 (+)
LP/J	MGP_LPJ_G0036966	sense overlapping lncRNA gene	Chr12:72842338-72864166 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0036877	sense overlapping lncRNA gene	Chr12:81098277-81121160 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0037713	sense overlapping lncRNA gene	Chr12:71699776-71720229 (+)
PWK/PhJ	MGP_PWKPhJ_G0035650	sense overlapping lncRNA gene	Chr12:64300282-64320800 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0035458	sense overlapping lncRNA gene	Chr12:66113964-66137947 (+)
WSB/EiJ	MGP_WSBEiJ_G0036158	sense overlapping lncRNA gene	Chr12:72296730-72316667 (+)

Homology

• Gene Tree
  Gm26709
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  1
• Gene trapped
  2
• Genomic Mutations
  1 involving Gm26709
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22

• Ensembl
  ENSMUSG00000097010 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000097010	Ensembl Gene Model | MGI Sequence Detail	20125	C57BL/6J
transcript	ENSMUST00000223049	Ensembl | MGI Sequence Detail	819	Not Applicable

References

• Summaries
  All 6

  Phenotypes 5
• Earliest
  J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14
• Latest
  J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9

TSS for Gm26709:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr113771	Chr12:72992406-72992417 (+)	-169 bp
Tssr113772	Chr12:72992452-72992462 (+)	-124 bp
Tssr113773	Chr12:72992464-72992471 (+)	-113 bp
Tssr113774	Chr12:72992474-72992484 (+)	-102 bp
Tssr113775	Chr12:72992537-72992548 (+)	-38 bp
Tssr113776	Chr12:72992561-72992574 (+)	-13 bp