Gm26666 Gene Detail

Summary

• Symbol
  Gm26666
• Name
  predicted gene, 26666

• Feature Type
  lncRNA gene
• IDs
  MGI:5477160
  NCBI Gene: 102634839
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr6:144993285-144996156 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  80 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5477160	lncRNA gene	Chr6:144993285-145008862 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0004391	antisense lncRNA gene	Chr6:150013886-150016762 (+)
A/J	MGP_AJ_G0004368	antisense lncRNA gene	Chr6:144079608-144082484 (+)
AKR/J	MGP_AKRJ_G0004350	antisense lncRNA gene	Chr6:148378412-148381283 (+)
BALB/cJ	MGP_BALBcJ_G0004354	antisense lncRNA gene	Chr6:143838858-143841732 (+)
C3H/HeJ	MGP_C3HHeJ_G0004303	antisense lncRNA gene	Chr6:148407001-148409872 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0004504	antisense lncRNA gene	Chr6:154049788-154052659 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003964	antisense lncRNA gene	Chr6:142832946-142835851 (+)
CAST/EiJ	MGP_CASTEiJ_G0004263	antisense lncRNA gene	Chr6:148018900-148021774 (+)
CBA/J	MGP_CBAJ_G0004297	antisense lncRNA gene	Chr6:159916234-159919107 (+)
DBA/2J	MGP_DBA2J_G0004312	antisense lncRNA gene	Chr6:142889104-142891975 (+)
FVB/NJ	MGP_FVBNJ_G0004329	antisense lncRNA gene	Chr6:141618701-141621576 (+)
LP/J	MGP_LPJ_G0004391	antisense lncRNA gene	Chr6:150111422-150114293 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0004320	antisense lncRNA gene	Chr6:163712580-163715453 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0004501	antisense lncRNA gene	Chr6:148210048-148212919 (+)
PWK/PhJ	MGP_PWKPhJ_G0004216	antisense lncRNA gene	Chr6:141388723-141391600 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0004158	antisense lncRNA gene	Chr6:146358713-146361569 (+)
WSB/EiJ	MGP_WSBEiJ_G0004302	antisense lncRNA gene	Chr6:148801614-148804488 (+)

Homology

• Gene Tree
  Gm26666
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  7
• Gene trapped
  7
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  26
• RefSeq
  5

• Ensembl
  ENSMUSG00000097419 (Evidence)
• NCBI Gene
  102634839

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000097419	Ensembl Gene Model | MGI Sequence Detail	2872	C57BL/6J
transcript	ENSMUST00000180763	Ensembl | MGI Sequence Detail	2461	Not Applicable

References

• Summaries
  All 4

  Phenotypes 1
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:141210 Mouse Genome Informatics (MGI) and National Center for Biotechnology Information (NCBI), Mouse Gene Trap Data Load from dbGSS. Database Download. 2008;

TSS for Gm26666:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr59519	Chr6:144994264-144994274 (+)	984 bp