Gm26597 Gene Detail

Summary

• Symbol
  Gm26597
• Name
  predicted gene, 26597

• Feature Type
  lncRNA gene
• IDs
  MGI:5477091
  NCBI Gene: 108169082
• Alliance
  gene page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr5:147336364-147338727 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  22 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5477091	lncRNA gene	Chr5:147336364-147338729 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0004220	antisense lncRNA gene	Chr5:153064842-153067217 (+)
A/J	MGP_AJ_G0004198	antisense lncRNA gene	Chr5:146570824-146573199 (+)
AKR/J	MGP_AKRJ_G0004179	antisense lncRNA gene	Chr5:151075009-151077384 (+)
BALB/cJ	MGP_BALBcJ_G0004185	antisense lncRNA gene	Chr5:147783796-147786171 (+)
C3H/HeJ	MGP_C3HHeJ_G0004133	antisense lncRNA gene	Chr5:152040723-152043098 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0004334	antisense lncRNA gene	Chr5:158652592-158654955 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003807	antisense lncRNA gene	Chr5:140985122-140987459 (+)
CAST/EiJ	MGP_CASTEiJ_G0004095	antisense lncRNA gene	Chr5:151608092-151610484 (+)
CBA/J	MGP_CBAJ_G0004127	antisense lncRNA gene	Chr5:165289106-165291469 (+)
DBA/2J	MGP_DBA2J_G0004143	antisense lncRNA gene	Chr5:146252481-146254844 (+)
FVB/NJ	MGP_FVBNJ_G0004159	antisense lncRNA gene	Chr5:145458004-145460379 (+)
LP/J	MGP_LPJ_G0004221	antisense lncRNA gene	Chr5:153757869-153760244 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0004149	antisense lncRNA gene	Chr5:167552689-167555064 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0004331	antisense lncRNA gene	Chr5:150983248-150985623 (+)
PWK/PhJ	MGP_PWKPhJ_G0004048	antisense lncRNA gene	Chr5:145348040-145350439 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0003992	antisense lncRNA gene	Chr5:148309330-148311667 (+)
WSB/EiJ	MGP_WSBEiJ_G0004131	antisense lncRNA gene	Chr5:151790047-151792410 (+)

Homology

• Gene Tree
  Gm26597
  

Expression

• Assay Results
  706
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  24
• RefSeq
  2

• Ensembl
  ENSMUSG00000097228 (Evidence)
• NCBI Gene
  108169082

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000097228	Ensembl Gene Model | MGI Sequence Detail	2364	C57BL/6J
transcript	ENSMUST00000181648	Ensembl | MGI Sequence Detail	1477	Not Applicable

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 4
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm26597:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr49813	Chr5:147337227-147337236 (+)	868 bp
Tssr49814	Chr5:147337258-147337283 (+)	907 bp