Gm25880 Gene Detail

Summary

• Symbol
  Gm25880
• Name
  predicted gene, 25880

• Feature Type
  snoRNA gene
• IDs
  MGI:5455657
  NCBI Gene: 115486268
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr4:153960841-153960972 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  7 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5455657	snoRNA gene	Chr4:153960841-153960972 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0039239	snoRNA gene	Chr4:158103116-158103247 (+)
A/J	MGP_AJ_G0039235	snoRNA gene	Chr4:151474879-151475010 (+)
AKR/J	MGP_AKRJ_G0039165	snoRNA gene	Chr4:155607627-155607758 (+)
BALB/cJ	MGP_BALBcJ_G0039218	snoRNA gene	Chr4:151943100-151943231 (+)
C3H/HeJ	MGP_C3HHeJ_G0038879	snoRNA gene	Chr4:156139586-156139717 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0039766	snoRNA gene	Chr4:163764905-163765036 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0036463	snoRNA gene	Chr4:143784946-143785077 (+)
CAST/EiJ	MGP_CASTEiJ_G0038012	snoRNA gene	Chr4:153542840-153542971 (+)
CBA/J	MGP_CBAJ_G0038850	snoRNA gene	Chr4:168683361-168683492 (+)
DBA/2J	MGP_DBA2J_G0039035	snoRNA gene	Chr4:151499665-151499796 (+)
FVB/NJ	MGP_FVBNJ_G0038990	snoRNA gene	Chr4:150700337-150700468 (+)
LP/J	MGP_LPJ_G0039079	snoRNA gene	Chr4:158016610-158016741 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0038991	snoRNA gene	Chr4:171596082-171596213 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0039865	snoRNA gene	Chr4:156166481-156166612 (+)
PWK/PhJ	MGP_PWKPhJ_G0037698	snoRNA gene	Chr4:147584277-147584408 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0037446	snoRNA gene	Chr4:150450425-150450556 (+)
WSB/EiJ	MGP_WSBEiJ_G0038241	snoRNA gene	Chr4:156336256-156336387 (+)

Homology

• Gene Tree
  Gm25880
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  3
• Targeted
  3
• Genomic Mutations
  3 involving Gm25880
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000077519 (Evidence)
• NCBI Gene
  115486268

Representative Sequences			Length	Strain/Species
genomic	115486268	NCBI Gene Model | MGI Sequence Detail	132	C57BL/6J
transcript	XR_004942372	RefSeq | MGI Sequence Detail	132	C57BL/6J

References

• Summaries
  All 6

  Phenotypes 3
• Earliest
  J:84714 Nishijima I, et al., Two new balancer chromosomes on mouse chromosome 4 to facilitate functional annotation of human chromosome 1p. Genesis. 2003 Jul;36(3):142-8
• Latest
  J:196071 van der Weyden L, et al., Cancer of mice and men: old twists and new tails. J Pathol. 2013 May;230(1):4-16