Gm25289 Gene Detail

Summary

• Symbol
  Gm25289
• Name
  predicted gene, 25289

• Feature Type
  snRNA gene
  BioType Conflict
  
• IDs
  MGI:5455066
  NCBI Gene: 115488965
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr18:12296495-12296613 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 18, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  28 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5455066	snRNA gene	Chr18:12296495-12296613 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0037657	snRNA gene	Chr18:9315513-9315630 (+)
A/J	MGP_AJ_G0037649	snRNA gene	Chr18:9168126-9168244 (+)
AKR/J	MGP_AKRJ_G0037587	snRNA gene	Chr18:9448729-9448847 (+)
BALB/cJ	MGP_BALBcJ_G0037632	snRNA gene	Chr18:9114614-9114732 (+)
C3H/HeJ	MGP_C3HHeJ_G0037305	snRNA gene	Chr18:9322035-9322153 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0038158	snRNA gene	Chr18:9803849-9803967 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0035084	snRNA gene	Chr18:8746477-8746594 (+)
CAST/EiJ	MGP_CASTEiJ_G0036471	snRNA gene	Chr18:9195852-9195969 (+)
CBA/J	MGP_CBAJ_G0037279	snRNA gene	Chr18:9935305-9935423 (+)
DBA/2J	MGP_DBA2J_G0037459	snRNA gene	Chr18:9014560-9014678 (+)
FVB/NJ	MGP_FVBNJ_G0037406	snRNA gene	Chr18:8874402-8874520 (+)
LP/J	MGP_LPJ_G0037513	snRNA gene	Chr18:9414805-9414922 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0037420	snRNA gene	Chr18:10106040-10106158 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0038266	snRNA gene	Chr18:9205584-9205695 (+)
PWK/PhJ	MGP_PWKPhJ_G0036167	snRNA gene	Chr18:9073829-9073946 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0035953	snRNA gene	Chr18:9472169-9472286 (+)
WSB/EiJ	MGP_WSBEiJ_G0036688	snRNA gene	Chr18:9206497-9206614 (+)

Homology

• Gene Tree
  Gm25289
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21

• Ensembl
  ENSMUSG00000084748 (Evidence)
• NCBI Gene
  115488965

Representative Sequences			Length	Strain/Species
genomic	115488965	NCBI Gene Model | MGI Sequence Detail	119	C57BL/6J

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm25289:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr150087	Chr18:12296492-12296496 (+)	-1 bp