Gm24574 Gene Detail

Summary

• Symbol
  Gm24574
• Name
  predicted gene, 24574

• Feature Type
  miRNA gene
• IDs
  MGI:5454351
• Alliance
  gene page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr2:75489588-75489661 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  10 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5454351	miRNA gene	Chr2:75489588-75489661 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0008555	miRNA gene	Chr2:76022856-76022929 (+)
A/J	MGP_AJ_G0008543	miRNA gene	Chr2:73046733-73046806 (+)
AKR/J	MGP_AKRJ_G0008528	miRNA gene	Chr2:75019701-75019774 (+)
BALB/cJ	MGP_BALBcJ_G0008531	miRNA gene	Chr2:73235215-73235288 (+)
C3H/HeJ	MGP_C3HHeJ_G0008471	miRNA gene	Chr2:75221918-75221991 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0008739	miRNA gene	Chr2:78281472-78281545 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0007725	miRNA gene	Chr2:70462947-70463020 (+)
CAST/EiJ	MGP_CASTEiJ_G0008328	miRNA gene	Chr2:75541972-75542045 (+)
CBA/J	MGP_CBAJ_G0008436	miRNA gene	Chr2:81144961-81145034 (+)
DBA/2J	MGP_DBA2J_G0008474	miRNA gene	Chr2:72643217-72643290 (+)
FVB/NJ	MGP_FVBNJ_G0008491	miRNA gene	Chr2:72032005-72032078 (+)
LP/J	MGP_LPJ_G0008562	miRNA gene	Chr2:75871185-75871258 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0008453	miRNA gene	Chr2:83033971-83034044 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0008727	miRNA gene	Chr2:75140078-75140151 (+)
PWK/PhJ	MGP_PWKPhJ_G0008255	miRNA gene	Chr2:72601255-72601328 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0008112	miRNA gene	Chr2:75376558-75376631 (+)
WSB/EiJ	MGP_WSBEiJ_G0008415	miRNA gene	Chr2:75599389-75599462 (+)

Homology

• Gene Tree
  Gm24574
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  2
• Targeted
  2
• Genomic Mutations
  2 involving Gm24574
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000093242 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000093242	Ensembl Gene Model | MGI Sequence Detail	74	C57BL/6J
transcript	ENSMUST00000175501	Ensembl | MGI Sequence Detail	74	Not Applicable

References

• Summaries
  All 4

  Phenotypes 3
• Earliest
  J:100298 Spitz F, et al., Inversion-induced disruption of the Hoxd cluster leads to the partition of regulatory landscapes. Nat Genet. 2005 Aug;37(8):889-93
• Latest
  J:269738 Guerreiro I, et al., Reorganisation of Hoxd regulatory landscapes during the evolution of a snake-like body plan. Elife. 2016 Aug 1;5:e16087

TSS for Gm24574:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr18457	Chr2:75489400-75489435 (+)	-170 bp
Tssr18458	Chr2:75489436-75489452 (+)	-144 bp