Snord80 Gene Detail

Summary

• Symbol
  Snord80
• Name
  small nucleolar RNA, C/D box 80
• Synonyms
  Gm24489

• Feature Type
  snoRNA gene
• IDs
  MGI:5454266
  NCBI Gene: 115487645
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr1:160865171-160865251 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  57 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5454266	snoRNA gene	Chr1:160865171-160865251 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0038458	snoRNA gene	Chr1:166288693-166288773 (+)
A/J	MGP_AJ_G0038448	snoRNA gene	Chr1:159521040-159521120 (+)
AKR/J	MGP_AKRJ_G0038386	snoRNA gene	Chr1:164389375-164389455 (+)
BALB/cJ	MGP_BALBcJ_G0038435	snoRNA gene	Chr1:160062708-160062788 (+)
C3H/HeJ	MGP_C3HHeJ_G0038098	snoRNA gene	Chr1:164590555-164590635 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0038973	snoRNA gene	Chr1:171935188-171935268 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0035754	snoRNA gene	Chr1:151638998-151639078 (+)
CAST/EiJ	MGP_CASTEiJ_G0037243	snoRNA gene	Chr1:164199605-164199685 (+)
CBA/J	MGP_CBAJ_G0038070	snoRNA gene	Chr1:178017041-178017121 (+)
DBA/2J	MGP_DBA2J_G0038261	snoRNA gene	Chr1:158500428-158500508 (+)
FVB/NJ	MGP_FVBNJ_G0038211	snoRNA gene	Chr1:156909571-156909651 (+)
LP/J	MGP_LPJ_G0038300	snoRNA gene	Chr1:167378508-167378588 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0038210	snoRNA gene	Chr1:185590536-185590616 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0039082	snoRNA gene	Chr1:164208079-164208159 (+)
PWK/PhJ	MGP_PWKPhJ_G0036928	snoRNA gene	Chr1:157656452-157656532 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0036684	snoRNA gene	Chr1:163103487-163103567 (+)
WSB/EiJ	MGP_WSBEiJ_G0037474	snoRNA gene	Chr1:164398305-164398385 (+)

Expression

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  24
• RefSeq
  1

• Ensembl
  ENSMUSG00000065735 (Evidence), ENSMUSG00002075950 (Evidence)
• NCBI Gene
  115487645

Representative Sequences			Length	Strain/Species
genomic	115487645	NCBI Gene Model | MGI Sequence Detail	81	C57BL/6J
transcript	XR_004936762	RefSeq | MGI Sequence Detail	81	C57BL/6J

References

• Summaries
  All 4
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Snord80:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr9678	Chr1:160865172-160865183 (+)	7 bp