Gm24000 Gene Detail

Summary

• Symbol
  Gm24000
• Name
  predicted gene, 24000

• Feature Type
  snoRNA gene
  BioType Conflict
  
• IDs
  MGI:5453777
  NCBI Gene: 115485828
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr11:6496147-6496235 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  10 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5453777	snoRNA gene	Chr11:6496147-6496235 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0038542	snoRNA gene	Chr11:3684813-3684901 (-)
A/J	MGP_AJ_G0038532	snoRNA gene	Chr11:3523135-3523223 (-)
AKR/J	MGP_AKRJ_G0038470	snoRNA gene	Chr11:3699790-3699878 (-)
BALB/cJ	MGP_BALBcJ_G0038519	snoRNA gene	Chr11:3531574-3531662 (-)
C3H/HeJ	MGP_C3HHeJ_G0038182	snoRNA gene	Chr11:3582076-3582164 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0039057	snoRNA gene	Chr11:3781330-3781418 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0035835	snoRNA gene	Chr11:3404650-3404738 (-)
CAST/EiJ	MGP_CASTEiJ_G0037326	snoRNA gene	Chr11:3571139-3571227 (-)
CBA/J	MGP_CBAJ_G0038154	snoRNA gene	Chr11:4208142-4208230 (-)
DBA/2J	MGP_DBA2J_G0038344	snoRNA gene	Chr11:3434813-3434901 (-)
FVB/NJ	MGP_FVBNJ_G0038295	snoRNA gene	Chr11:3455997-3456085 (-)
LP/J	MGP_LPJ_G0038384	snoRNA gene	Chr11:3755258-3755346 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0038294	snoRNA gene	Chr11:3756040-3756128 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0039166	snoRNA gene	Chr11:3721799-3721887 (-)
PWK/PhJ	MGP_PWKPhJ_G0037012	snoRNA gene	Chr11:3470341-3470429 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0036768	snoRNA gene	Chr11:3656723-3656811 (-)
WSB/EiJ	MGP_WSBEiJ_G0037557	snoRNA gene	Chr11:3549127-3549215 (-)

Homology

• Gene Tree
  Gm24000
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Gene trapped
  1
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21

• Ensembl
  ENSMUSG00000088688 (Evidence)
• NCBI Gene
  115485828

Representative Sequences			Length	Strain/Species
genomic	115485828	NCBI Gene Model | MGI Sequence Detail	89	C57BL/6J

References

• Summaries
  All 5

  Phenotypes 2
• Earliest
  J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9

TSS for Gm24000:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr106740	Chr11:6496753-6496793 (-)	-538 bp