Mir5615-2 Gene Detail

Summary

• Symbol
  Mir5615-2
• Name
  microRNA 5615-2
• Synonyms
  mmu-mir-5615-2

• Feature Type
  miRNA gene
• IDs
  MGI:5453144
  NCBI Gene: 100885826
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr10:80940450-80940509 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  72 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5453144	miRNA gene	Chr10:80940450-80940509 (+)
129S1/SvImJ	ENSMUSG00200050797	miRNA gene	Chr10:77567613-77567672 (+)
A/J	ENSMUSG00195050006	miRNA gene	Chr10:77962861-77962920 (+)
AKR/J	ENSMUSG00220048783	miRNA gene	Chr10:77560530-77560589 (+)
BALB/cJ	ENSMUSG00180053234	miRNA gene	Chr10:77973299-77973358 (+)
C3H/HeJ	ENSMUSG00175052682	miRNA gene	Chr10:77844058-77844117 (+)
C57BL/6NJ	ENSMUSG00215053330	miRNA gene	Chr10:77585914-77585973 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0007040	miRNA gene	Chr10:75103898-75103957 (+)
CAST/EiJ	ENSTCUG00005051751	miRNA gene	Chr10:77468205-77468264 (+)
CBA/J	ENSMUSG00210050307	miRNA gene	Chr10:77700084-77700143 (+)
DBA/2J	ENSMUSG00185053466	miRNA gene	Chr10:78042512-78042571 (+)
FVB/NJ	ENSMUSG00205051637	miRNA gene	Chr10:77755323-77755382 (+)
JF1/MsJ	ENSUMUG00000055818	miRNA gene	Chr10:79270217-79270276 (+)
LP/J	ENSMUSG00230051091	miRNA gene	Chr10:79812113-79812172 (+)
NOD/ShiLtJ	ENSMUSG00190052389	miRNA gene	Chr10:77956220-77956279 (+)
NZO/HlLtJ	ENSMUSG00225053320	miRNA gene	Chr10:84098652-84098711 (+)
PWK/PhJ	ENSLUMG00010051987	miRNA gene	Chr10:77634158-77634217 (+)
SPRET/EiJ	ENSMSPG00010048136	miRNA gene	Chr10:79244881-79244940 (+)
WSB/EiJ	ENSIUOG00005051275	miRNA gene	Chr10:77696882-77696941 (+)

Homology

• Gene Tree
  Mir5615-2
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Mir5615-2
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  24
• RefSeq
  1

• Ensembl
  ENSMUSG00000093498 (Evidence)
• NCBI Gene
  100885826

Representative Sequences			Length	Strain/Species
genomic	100885826	NCBI Gene Model | MGI Sequence Detail	60	C57BL/6J
transcript	NR_049187	RefSeq | MGI Sequence Detail	60	ZRU/MplStud

Other Database
Links

miRBase

MI0019182

References

• Summaries
  All 10

  Phenotypes 5
• Earliest
  J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
• Latest
  J:105741 Griffiths-Jones S, et al., miRBase: microRNA sequences, targets and gene nomenclature. Nucleic Acids Res. 2006 Jan 1;34(Database issue):D140-4

TSS for Mir5615-2:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr94670	Chr10:80938517-80938522 (+)	-1,930 bp