Mir5615-2 Gene Detail

Summary

• Symbol
  Mir5615-2
• Name
  microRNA 5615-2
• Synonyms
  mmu-mir-5615-2

• Feature Type
  miRNA gene
• IDs
  MGI:5453144
  NCBI Gene: 100885826
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr10:80940450-80940509 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  1 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5453144	miRNA gene	Chr10:80940450-80940509 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0007733	miRNA gene	Chr10:81791842-81791901 (+)
A/J	MGP_AJ_G0007729	miRNA gene	Chr10:78900200-78900259 (+)
AKR/J	MGP_AKRJ_G0007704	miRNA gene	Chr10:81069173-81069232 (+)
BALB/cJ	MGP_BALBcJ_G0007707	miRNA gene	Chr10:79115401-79115460 (+)
C3H/HeJ	MGP_C3HHeJ_G0007653	miRNA gene	Chr10:81153275-81153334 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0007883	miRNA gene	Chr10:84597982-84598041 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0007040	miRNA gene	Chr10:75103898-75103957 (+)
CAST/EiJ	MGP_CASTEiJ_G0007548	miRNA gene	Chr10:81391295-81391354 (+)
CBA/J	MGP_CBAJ_G0007626	miRNA gene	Chr10:87893736-87893795 (+)
DBA/2J	MGP_DBA2J_G0007660	miRNA gene	Chr10:78094648-78094707 (+)
FVB/NJ	MGP_FVBNJ_G0007677	miRNA gene	Chr10:77337717-77337776 (+)
LP/J	MGP_LPJ_G0007738	miRNA gene	Chr10:82239024-82239083 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0007650	miRNA gene	Chr10:89761863-89761922 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0007881	miRNA gene	Chr10:81058180-81058239 (+)
PWK/PhJ	MGP_PWKPhJ_G0007480	miRNA gene	Chr10:77998963-77999022 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0007377	miRNA gene	Chr10:80016477-80016536 (+)
WSB/EiJ	MGP_WSBEiJ_G0007615	miRNA gene	Chr10:81096701-81096760 (+)

Homology

• Gene Tree
  Mir5615-2
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Mir5615-2
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  1

• Ensembl
  ENSMUSG00000093498 (Evidence)
• NCBI Gene
  100885826

Representative Sequences			Length	Strain/Species
genomic	100885826	NCBI Gene Model | MGI Sequence Detail	60	C57BL/6J
transcript	NR_049187	RefSeq | MGI Sequence Detail	60	ZRU/MplStud

Other Database
Links

miRBase

MI0019182

References

• Summaries
  All 9

  Phenotypes 5
• Earliest
  J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
• Latest
  J:105741 Griffiths-Jones S, et al., miRBase: microRNA sequences, targets and gene nomenclature. Nucleic Acids Res. 2006 Jan 1;34(Database issue):D140-4

TSS for Mir5615-2:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr94670	Chr10:80938517-80938522 (+)	-1,930 bp