Gm22652 Gene Detail

Summary

• Symbol
  Gm22652
• Name
  predicted gene, 22652

• Feature Type
  snoRNA gene
• IDs
  MGI:5452429
  NCBI Gene: 115489603
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr2:80680632-80680762 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  21 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5452429	snoRNA gene	Chr2:80680632-80680762 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0039017	snoRNA gene	Chr2:81449794-81449924 (+)
A/J	MGP_AJ_G0039012	snoRNA gene	Chr2:78307835-78307965 (+)
AKR/J	MGP_AKRJ_G0038947	snoRNA gene	Chr2:80344741-80344871 (+)
BALB/cJ	MGP_BALBcJ_G0038995	snoRNA gene	Chr2:78457457-78457587 (+)
C3H/HeJ	MGP_C3HHeJ_G0038659	snoRNA gene	Chr2:80600216-80600346 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0039545	snoRNA gene	Chr2:83851604-83851734 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0036262	snoRNA gene	Chr2:75499950-75500080 (+)
CAST/EiJ	MGP_CASTEiJ_G0037799	snoRNA gene	Chr2:81009622-81009752 (+)
CBA/J	MGP_CBAJ_G0038630	snoRNA gene	Chr2:86887508-86887638 (+)
DBA/2J	MGP_DBA2J_G0038819	snoRNA gene	Chr2:77866246-77866376 (+)
FVB/NJ	MGP_FVBNJ_G0038771	snoRNA gene	Chr2:77177412-77177542 (+)
LP/J	MGP_LPJ_G0038858	snoRNA gene	Chr2:81325841-81325971 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0038771	snoRNA gene	Chr2:88751069-88751199 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0039645	snoRNA gene	Chr2:80516856-80516986 (+)
PWK/PhJ	MGP_PWKPhJ_G0037483	snoRNA gene	Chr2:77794119-77794249 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0037237	snoRNA gene	Chr2:80760975-80761105 (+)
WSB/EiJ	MGP_WSBEiJ_G0038027	snoRNA gene	Chr2:81170246-81170376 (+)

Homology

• Gene Tree
  Gm22652
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  2
• Targeted
  2
• Genomic Mutations
  2 involving Gm22652
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000065141 (Evidence)
• NCBI Gene
  115489603

Representative Sequences			Length	Strain/Species
genomic	115489603	NCBI Gene Model | MGI Sequence Detail	131	C57BL/6J
transcript	XR_004941178	RefSeq | MGI Sequence Detail	131	C57BL/6J

References

• Summaries
  All 6

  Phenotypes 3
• Earliest
  J:100298 Spitz F, et al., Inversion-induced disruption of the Hoxd cluster leads to the partition of regulatory landscapes. Nat Genet. 2005 Aug;37(8):889-93
• Latest
  J:269738 Guerreiro I, et al., Reorganisation of Hoxd regulatory landscapes during the evolution of a snake-like body plan. Elife. 2016 Aug 1;5:e16087