Ccl21d Gene Detail

Summary

• Symbol
  Ccl21d
• Name
  C-C motif chemokine ligand 21D
• Synonyms
  Gm21541

• Feature Type
  protein coding gene
• IDs
  MGI:5434896
  NCBI Gene: 100862177
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr4:41903610-41904743 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• Strain Annotations
  9

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5434896	protein coding gene	Chr4:41896187-41904743 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0028183	protein coding gene	Chr4:40261443-40262562 (+)
A/J	no annotation
AKR/J	no annotation
BALB/cJ	MGP_BALBcJ_G0028166	protein coding gene	Chr4:39459690-39460932 (-)
C3H/HeJ	MGP_C3HHeJ_G0027883	protein coding gene	Chr4:40344387-40345520 (+)
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	MGP_DBA2J_G0028000	protein coding gene	Chr4:39107130-39108263 (+)
FVB/NJ	MGP_FVBNJ_G0027969	protein coding gene	Chr4:38539276-38540516 (-)
LP/J	no annotation
NOD/ShiLtJ	MGP_NODShiLtJ_G0027990	protein coding gene	Chr4:46424315-46425447 (+)
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	MGP_SPRETEiJ_G0026874	protein coding gene	Chr4:39544502-39545584 (+)
WSB/EiJ	MGP_WSBEiJ_G0027404	protein coding gene	Chr4:39379241-39380363 (-)

Homology

• Human Ortholog
  CCL21, C-C motif chemokine ligand 21

• Vertebrate Orthologs
  3

Vertebrate Orthology Source

Alliance of Genome Resources

• Human Ortholog
  CCL21, C-C motif chemokine ligand 21
  
• Synonyms
  6Ckine, CKb9, ECL, SCYA21, SLC, TCA4
• Links
  HGNC:10620

  NCBI Gene ID: 6366

  UniProt: O00585

  
  
• Chr Location
  9p13.3; chr9:34709005-34710136 (-)  GRCh38

---

• MGI Vertebrate Homology
  Ccl21d stringent orthology
  1 human;1 mouse;1 rat;1 zebrafish
  
• HCOP
  vertebrate homology predictions: CCL21
• Gene Tree
  Ccl21d
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  1
• Chemically and radiation induced
  1
• Genomic Mutations
  1 involving Ccl21d
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706
• cDNA Data
  2

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  19
• RefSeq
  4
• CCDS
  CCDS57267.1

• Ensembl
  ENSMUSG00000094065 (Evidence)
• NCBI Gene
  100862177

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000094065	Ensembl Gene Model | MGI Sequence Detail	1134	C57BL/6J
transcript	ENSMUST00000098128	Ensembl | MGI Sequence Detail	870	Not Applicable
polypeptide	ENSMUSP00000095732	Ensembl | MGI Sequence Detail	133	Not Applicable

Molecular
Reagents

• All nucleic 2

  cDNA 2

Other
Accession IDs

MGI:6363004

References

• Summaries
  All 28

  Phenotypes 1
• Earliest
  J:42623 Hromas R, et al., Isolation and characterization of Exodus-2, a novel C-C chemokine with a unique 37-amino acid carboxyl-terminal extension. J Immunol. 1997 Sep 15;159(6):2554-8
• Latest
  J:257967 Wurm S, et al., CCR7 Is Important for Mesangial Cell Physiology and Repair. J Histochem Cytochem. 2018 Jan;66(1):7-22