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Ccl21d Gene Detail
Summary
  • Symbol
    Ccl21d
  • Name
    C-C motif chemokine ligand 21D
  • Synonyms
    Gm21541
  • Feature Type
    protein coding gene
  • IDs
    MGI:5434896
    NCBI Gene: 100862177
  • Alliance
    gene page
Location &
Maps
more
  • Sequence Map
    Chr4:41903610-41904743 bp, + strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 4, Syntenic
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • Strain Annotations
    9
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_5434896
 protein coding gene Chr4:41896187-41904743 (+)
129S1/SvImJ MGP_129S1SvImJ_G0028183
 protein coding gene Chr4:40261443-40262562 (+)
A/J no annotation
AKR/J no annotation
BALB/cJ MGP_BALBcJ_G0028166
 protein coding gene Chr4:39459690-39460932 (-)
C3H/HeJ MGP_C3HHeJ_G0027883
 protein coding gene Chr4:40344387-40345520 (+)
C57BL/6NJ no annotation
CAROLI/EiJ no annotation
CAST/EiJ no annotation
CBA/J no annotation
DBA/2J MGP_DBA2J_G0028000
 protein coding gene Chr4:39107130-39108263 (+)
FVB/NJ MGP_FVBNJ_G0027969
 protein coding gene Chr4:38539276-38540516 (-)
LP/J no annotation
NOD/ShiLtJ MGP_NODShiLtJ_G0027990
 protein coding gene Chr4:46424315-46425447 (+)
NZO/HlLtJ no annotation
PWK/PhJ no annotation
SPRET/EiJ MGP_SPRETEiJ_G0026874
 protein coding gene Chr4:39544502-39545584 (+)
WSB/EiJ MGP_WSBEiJ_G0027404
 protein coding gene Chr4:39379241-39380363 (-)



Homology
more
  • Human Ortholog
    CCL21, C-C motif chemokine ligand 21
  • Vertebrate Orthologs
    4
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    CCL21, C-C motif chemokine ligand 21
  • Synonyms
    6Ckine, CKb9, ECL, SCYA21, SLC, TCA4
  • Links
    NCBI Gene ID: 6366
    neXtProt AC: NX_O00585
    UniProt: O00585

  • Chr Location
    9p13.3; chr9:34709005-34710136 (-)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    1 phenotype reference
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    26
  • GO References
    1
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    2
Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000094065 Ensembl Gene Model | MGI Sequence Detail 1134 C57BL/6J ±  kb
transcript ENSMUST00000098128 Ensembl | MGI Sequence Detail 870 Not Applicable  
polypeptide ENSMUSP00000095732 Ensembl | MGI Sequence Detail 133 Not Applicable  
For the selected sequence
Molecular
Reagents
less
  • All nucleic 2
    cDNA 2
References
more
  • Summaries
    All 29
    Gene Ontology 1
    Phenotypes 1
  • Earliest
    J:42623 Hromas R, et al., Isolation and characterization of Exodus-2, a novel C-C chemokine with a unique 37-amino acid carboxyl-terminal extension. J Immunol. 1997 Sep 15;159(6):2554-8
  • Latest
    J:257967 Wurm S, et al., CCR7 Is Important for Mesangial Cell Physiology and Repair. J Histochem Cytochem. 2018 Jan;66(1):7-22
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
04/16/2024
MGI 6.23 		The Jackson Laboratory