Gm20939 Gene Detail

Summary

• Symbol
  Gm20939
• Name
  predicted gene, 20939

• Feature Type
  protein coding gene
  BioType Conflict
  
• IDs
  MGI:5434295
  NCBI Gene: 100044193
• Alliance
  gene page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr17:94864918-94878321 bp, + strand
• From Ensembl annotation of GRCm38
  

  View this region in JBrowse
  
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 17, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  9 from dbSNP Build 142
• Strain Annotations
  3

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5434295	protein coding gene	Chr17:94864804-94879737 (+)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	MGP_FVBNJ_G0025105	protein coding gene	Chr19:58269354-58270802 (+)
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	MGP_NZOHlLtJ_G0030343	protein coding gene	Chr5:110560747-110562699 (-)
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Protein SuperFamily
  zinc finger protein ZFP-36
• Gene Tree
  Gm20939
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  6
• Gene trapped
  6
• Incidental Mutations
  APF
• Find Mice (IMSR)
  7 strains or lines available

Expression

• cDNA Data
  1

• Other Mouse Links
  GEO
  Expression Atlas

Interactions

• Gm20939 interacts with 25 markers (Mir15a, Mir34a, Mir34b, ...) View All

Sequences &
Gene Models

• All Sequences
  14
• RefSeq
  4
• UniProt
  1

• Ensembl
  ENSMUSG00000095193 (Evidence)
• NCBI Gene
  100044193

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000095193	Ensembl Gene Model | MGI Sequence Detail	13404	C57BL/6J
transcript	ENSMUST00000234295	Ensembl | MGI Sequence Detail	3079	Not Applicable
polypeptide	NP_001019902	RefSeq | MGI Sequence Detail	524	C57BL/6

Protein
Information

• UniProt
  1 Sequence
• InterPro Domains
  IPR036051 KRAB domain superfamily
  IPR001909 Krueppel-associated box
  IPR036236 Zinc finger C2H2 superfamily
  IPR013087 Zinc finger C2H2-type

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 7

  Phenotypes 2
• Earliest
  J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14

TSS for Gm20939:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr146270	Chr17:94864886-94864922 (+)	-14 bp
Tssr146271	Chr17:94864928-94864933 (+)	13 bp
Tssr146272	Chr17:94864937-94864946 (+)	24 bp