About   Help   FAQ
Gapdh-ps15 Pseudogene Detail
Summary
  • Symbol
    Gapdh-ps15
  • Name
    glyceraldehyde-3-phosphate dehydrogenase, pseudogene 15
  • Synonyms
    Gm20899
Location &
Maps
more
  • Sequence Map
    ChrY:38619783-38620784 bp, + strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome Y, Syntenic
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • Strain Annotations
    1
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_5434255
pseudogene ChrY:38619728-38620971 (.)
129S1/SvImJ no annotation
A/J no annotation
AKR/J no annotation
BALB/cJ no annotation
C3H/HeJ no annotation
C57BL/6NJ no annotation
CAROLI/EiJ no annotation
CAST/EiJ no annotation
CBA/J no annotation
DBA/2J no annotation
FVB/NJ no annotation
LP/J no annotation
NOD/ShiLtJ no annotation
NZO/HlLtJ no annotation
PWK/PhJ no annotation
SPRET/EiJ no annotation
WSB/EiJ no annotation



Homology
more
  • Human Ortholog
    GAPDH, glyceraldehyde-3-phosphate dehydrogenase
  • Vertebrate Orthologs
    13
  • Human Ortholog
    GAPDH, glyceraldehyde-3-phosphate dehydrogenase
    Orthology source: HomoloGene
  • Synonyms
    G3PD, GAPD, HEL-S-162eP
  • Links
    NCBI Gene ID: 2597
    neXtProt AC: NX_P04406
    UniProt: P04406

  • Chr Location
    12p13.31; chr12:6534405-6538375 (+)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    2 phenotype references
Expression
less
Interactions
less
Sequences &
Gene Models
less
  • All Sequences
  • RefSeq
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000096438 Ensembl Gene Model | MGI Sequence Detail 1002 C57BL/6J ±  kb
transcript ENSMUST00000180966 Ensembl | MGI Sequence Detail 1002 Not Applicable  
polypeptide XP_001476757 RefSeq | MGI Sequence Detail 333 C57BL/6J  
For the selected sequence
References
more
  • Summaries
    All 6
    Phenotypes 2
  • Earliest
    J:249943 MacBride MM, et al., Mild reproductive impact of a Y chromosome deletion on a C57BL/6J substrain. Mamm Genome. 2017 Jun;28(5-6):155-165
  • Latest
    J:250379 Fischer M, et al., Large deletion on the Y-chromosome long arm (Yq) of C57BL/6JBomTac inbred mice. Mamm Genome. 2017 Feb;28(1-2):31-37

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
Warranty Disclaimer & Copyright Notice
Send questions and comments to User Support.
last database update
11/06/2018
MGI 6.13
The Jackson Laboratory