Gm20718 Pseudogene Detail

Summary

• Symbol
  Gm20718
• Name
  predicted gene 20718

• Feature Type
  pseudogene
• IDs
  MGI:5313165
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr6:58112870-58113128 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, 27.82 cM

Strain
Comparison

• SNPs within 2kb
  24 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5313165	pseudogene	Chr6:58112870-58113128 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0013470	pseudogene	Chr6:57686130-57686388 (+)
A/J	MGP_AJ_G0013454	pseudogene	Chr6:55134325-55134583 (+)
AKR/J	MGP_AKRJ_G0013419	pseudogene	Chr6:56988643-56988901 (+)
BALB/cJ	MGP_BALBcJ_G0013433	pseudogene	Chr6:55450300-55450558 (+)
C3H/HeJ	MGP_C3HHeJ_G0013282	pseudogene	Chr6:56974944-56975202 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0013819	pseudogene	Chr6:58990300-58990558 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	MGP_CASTEiJ_G0012956	pseudogene	Chr6:45100458-45100716 (+)
CBA/J	MGP_CBAJ_G0013251	pseudogene	Chr6:61434427-61434685 (+)
DBA/2J	MGP_DBA2J_G0013335	pseudogene	Chr6:54900177-54900435 (+)
FVB/NJ	MGP_FVBNJ_G0013332	pseudogene	Chr6:54483974-54484232 (+)
LP/J	MGP_LPJ_G0013405	pseudogene	Chr6:57619803-57620061 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0013352	pseudogene	Chr6:63973580-63973838 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0013816	pseudogene	Chr6:56847527-56847785 (+)
PWK/PhJ	MGP_PWKPhJ_G0012796	pseudogene	Chr6:53979470-53979728 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0012579	pseudogene	Chr6:56085337-56085596 (+)
WSB/EiJ	MGP_WSBEiJ_G0013035	pseudogene	Chr6:57036964-57037222 (+)

Homology

• Gene Tree
  Gm20718
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  19

• Ensembl
  ENSMUSG00000093708 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000093708	Ensembl Gene Model | MGI Sequence Detail	259	C57BL/6J
transcript	ENSMUST00000176058	Ensembl | MGI Sequence Detail	259	Not Applicable

References

• Summaries
  All 2
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;