Gm20711 Gene Detail

Summary

• Symbol
  Gm20711
• Name
  predicted gene 20711

• Feature Type
  lncRNA gene
• IDs
  MGI:5313158
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr1:167831708-167950034 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, 75.77 cM

Strain
Comparison

• SNPs within 2kb
  1122 from dbSNP Build 142
• Strain Annotations
  11

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5313158	lncRNA gene	Chr1:167831708-167950034 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0002788	antisense lncRNA gene	Chr1:173617949-173741948 (+)
A/J	MGP_AJ_G0002764	antisense lncRNA gene	Chr1:166511058-166630873 (+)
AKR/J	MGP_AKRJ_G0002745	antisense lncRNA gene	Chr1:171563314-171681717 (+)
BALB/cJ	MGP_BALBcJ_G0002751	antisense lncRNA gene	Chr1:167001585-167122039 (+)
C3H/HeJ	MGP_C3HHeJ_G0002709	antisense lncRNA gene	Chr1:171792013-171914017 (+)
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	MGP_DBA2J_G0002711	antisense lncRNA gene	Chr1:165368150-165486754 (+)
FVB/NJ	MGP_FVBNJ_G0002731	antisense lncRNA gene	Chr1:163815382-163934402 (+)
LP/J	no annotation
NOD/ShiLtJ	MGP_NODShiLtJ_G0002721	antisense lncRNA gene	Chr1:193144250-193268235 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0002898	antisense lncRNA gene	Chr1:171431908-171558668 (+)
PWK/PhJ	MGP_PWKPhJ_G0002639	antisense lncRNA gene	Chr1:164581830-164705262 (+)
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm20711
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  2
• Genomic Mutations
  2 involving Gm20711
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  13

• Ensembl
  ENSMUSG00000093538 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000093538	Ensembl Gene Model | MGI Sequence Detail	118327	C57BL/6J
transcript	ENSMUST00000177351	Ensembl | MGI Sequence Detail	714	Not Applicable

References

• Summaries
  All 4

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;