Gm20674 Pseudogene Detail

Summary

• Symbol
  Gm20674
• Name
  predicted gene 20674

• Feature Type
  pseudogene
• IDs
  MGI:5313121
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr6:58371039-58371407 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, 27.82 cM

Strain
Comparison

• SNPs within 2kb
  23 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5313121	pseudogene	Chr6:58371039-58371407 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0013468	pseudogene	Chr6:57441881-57442249 (+)
A/J	MGP_AJ_G0013455	pseudogene	Chr6:55415986-55416354 (+)
AKR/J	MGP_AKRJ_G0013420	pseudogene	Chr6:57268107-57268475 (+)
BALB/cJ	MGP_BALBcJ_G0013434	pseudogene	Chr6:55740479-55740847 (+)
C3H/HeJ	MGP_C3HHeJ_G0013283	pseudogene	Chr6:57252440-57252808 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0013820	pseudogene	Chr6:59295102-59295470 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0011899	pseudogene	Chr6:52293347-52293715 (-)
CAST/EiJ	MGP_CASTEiJ_G0012988	pseudogene	Chr6:56496979-56497348 (+)
CBA/J	MGP_CBAJ_G0013252	pseudogene	Chr6:61779158-61779526 (+)
DBA/2J	MGP_DBA2J_G0013336	pseudogene	Chr6:55160149-55160517 (+)
FVB/NJ	MGP_FVBNJ_G0013333	pseudogene	Chr6:54743900-54744268 (+)
LP/J	MGP_LPJ_G0013406	pseudogene	Chr6:57911876-57912244 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0013353	pseudogene	Chr6:64324229-64324597 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0013817	pseudogene	Chr6:57147384-57147752 (+)
PWK/PhJ	no annotation
SPRET/EiJ	MGP_SPRETEiJ_G0012580	pseudogene	Chr6:56359823-56360190 (+)
WSB/EiJ	MGP_WSBEiJ_G0013032	pseudogene	Chr6:56675181-56675549 (+)

Homology

• Gene Tree
  Gm20674
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  19

• Ensembl
  ENSMUSG00000093547 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000093547	Ensembl Gene Model | MGI Sequence Detail	369	C57BL/6J
transcript	ENSMUST00000177452	Ensembl | MGI Sequence Detail	369	Not Applicable

References

• Summaries
  All 2
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;