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Ly6l Gene Detail
Summary
  • Symbol
    Ly6l
  • Name
    lymphocyte antigen 6 complex, locus L
  • Synonyms
    Gm20654
  • Feature Type
    protein coding gene
  • IDs
    MGI:5313101
    NCBI Gene: 102637705
  • Alliance
Location &
Maps
more
  • Sequence Map
    Chr15:75449457-75451406 bp, + strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 15, 34.37 cM
Strain
Comparison
more
  • SNPs within 2kb
    41 from dbSNP Build 142
  • Strain Annotations
    16
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_5313101
protein coding gene Chr15:75449348-75454942 (+)
129S1/SvImJ MGP_129S1SvImJ_G0021952
protein coding gene Chr15:75385344-75529805 (+)
A/J MGP_AJ_G0021910
protein coding gene Chr15:72725706-72727654 (+)
AKR/J MGP_AKRJ_G0025278
protein coding gene Chr2:6780813-6782762 (-)
BALB/cJ MGP_BALBcJ_G0021919
protein coding gene Chr15:72659185-72729110 (+)
C3H/HeJ MGP_C3HHeJ_G0021691
protein coding gene Chr15:74687826-74828387 (+)
C57BL/6NJ MGP_C57BL6NJ_G0022359
protein coding gene Chr15:78250473-78252422 (+)
CAROLI/EiJ no annotation
CAST/EiJ MGP_CASTEiJ_G0021210
protein coding gene Chr15:75511772-75513722 (+)
CBA/J MGP_CBAJ_G0021658
protein coding gene Chr15:80736750-80816125 (+)
DBA/2J MGP_DBA2J_G0021783
protein coding gene Chr15:72239317-72313375 (+)
FVB/NJ MGP_FVBNJ_G0021764
protein coding gene Chr15:71253721-71367293 (+)
LP/J MGP_LPJ_G0021854
protein coding gene Chr15:75458345-75564702 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0021788
protein coding gene Chr15:86062763-86177312 (+)
NZO/HlLtJ no annotation
PWK/PhJ MGP_PWKPhJ_G0020951
protein coding gene Chr15:72367571-72369557 (+)
SPRET/EiJ MGP_SPRETEiJ_G0020790
protein coding gene Chr15:74646179-74648158 (+)
WSB/EiJ MGP_WSBEiJ_G0021262
protein coding gene Chr15:74977359-75079197 (+)



Homology
more
  • Human Ortholog
    LY6L, lymphocyte antigen 6 family member L
  • Vertebrate Orthologs
    4
  • Human Ortholog
    LY6L, lymphocyte antigen 6 family member L
    Orthology source: HomoloGene
  • Links
    NCBI Gene ID: 101928108
    neXtProt AC: NX_H3BQJ8
    UniProt: H3BQJ8

  • Chr Location
    chr8:143081045-143083467 (+)  GRCh38.p7

Human Diseases
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  • References
    1 with disease annotations
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    22 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell population proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000093626 Ensembl Gene Model | MGI Sequence Detail 1950 C57BL/6J ±  kb
transcript ENSMUST00000177479 Ensembl | MGI Sequence Detail 430 Not Applicable  
polypeptide ENSMUSP00000134982 Ensembl | MGI Sequence Detail 140 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    1 Sequence
  • InterPro Domains
    IPR016054 Ly-6 antigen/uPA receptor-like
References
more
  • Summaries
    All 30
    Diseases 1
    Gene Ontology 1
    Phenotypes 22
  • Earliest
    J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
  • Latest
    J:233611 Hirata A, et al., Homeobox family Hoxc localization during murine palate formation. Congenit Anom (Kyoto). 2016 Jul;56(4):172-9

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
Citing These Resources
Funding Information
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last database update
10/08/2019
MGI 6.14
The Jackson Laboratory