Gm20652 Gene Detail

Summary

• Symbol
  Gm20652
• Name
  predicted gene 20652

• Feature Type
  lncRNA gene
• IDs
  MGI:5313099
  NCBI Gene: 102636610
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr3:88525215-88528417 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, 38.90 cM

Strain
Comparison

• SNPs within 2kb
  111 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5313099	lncRNA gene	Chr3:88523764-88528417 (-)
129S1/SvImJ	ENSMUSG00200040124	lncRNA gene	Chr3:85378662-85383266 (-)
A/J	ENSMUSG00195053727	lncRNA gene	Chr3:85400808-85405412 (-)
AKR/J	ENSMUSG00220051702	lncRNA gene	Chr3:85355422-85360027 (-)
BALB/cJ	ENSMUSG00180050523	lncRNA gene	Chr3:85525180-85529764 (-)
C3H/HeJ	ENSMUSG00175048480	lncRNA gene	Chr3:85333558-85338162 (-)
C57BL/6NJ	ENSMUSG00215050579	lncRNA gene	Chr3:85766410-85771013 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003386	antisense lncRNA gene	Chr3:81399450-81404313 (-)
CAST/EiJ	ENSTCUG00005048127	lncRNA gene	Chr3:84850855-84855484 (-)
CBA/J	ENSMUSG00210048476	lncRNA gene	Chr3:85471237-85475839 (-)
DBA/2J	ENSMUSG00185053910	lncRNA gene	Chr3:85613730-85618314 (-)
FVB/NJ	ENSMUSG00205049697	lncRNA gene	Chr3:84395190-84399794 (-)
JF1/MsJ	ENSUMUG00000051203	lncRNA gene	Chr3:85135227-85139874 (-)
LP/J	ENSMUSG00230036716	lncRNA gene	Chr3:87600026-87604629 (-)
NOD/ShiLtJ	ENSMUSG00190050053	lncRNA gene	Chr3:85847340-85851947 (-)
NZO/HlLtJ	ENSMUSG00225007774	lncRNA gene	Chr3:90362542-90367144 (-)
PWK/PhJ	ENSLUMG00010052459	lncRNA gene	Chr3:85224732-85229318 (-)
SPRET/EiJ	ENSMSPG00010050115	lncRNA gene	Chr3:86069825-86074533 (-)
WSB/EiJ	ENSIUOG00005050658	lncRNA gene	Chr3:85875792-85880395 (-)

Homology

• Gene Tree
  Gm20652
  

Human Diseases

• References
  1 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  7 phenotype references
  

• All Mutations and Alleles
  7
• Chemically induced (other)
  1
• Gene trapped
  5
• Radiation induced
  1
• Genomic Mutations
  2 involving Gm20652
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  1

• Ensembl
  ENSMUSG00000093390 (Evidence)
• NCBI Gene
  102636610

Representative Sequences			Length	Strain/Species
genomic	102636610	NCBI Gene Model | MGI Sequence Detail	3203	C57BL/6J
transcript	XR_375820	RefSeq | MGI Sequence Detail	205	C57BL/6J

References

• Summaries
  All 12

  Diseases 1

  Phenotypes 7
• Earliest
  J:70677 Cook SA, et al., Mouse paracentric inversion In(3)55Rk mutates the urate oxidase gene. Cytogenet Cell Genet. 2001;93(1-2):77-82
• Latest
  J:302829 Lu J, et al., Mouse models for human hyperuricaemia: a critical review. Nat Rev Rheumatol. 2019 Jul;15(7):413-426

TSS for Gm20652:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr34057	Chr3:88530035-88530040 (-)	-1,621 bp