Gm20650 Gene Detail

Summary

• Symbol
  Gm20650
• Name
  predicted gene 20650

• Feature Type
  lncRNA gene
• IDs
  MGI:5313097
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr7:126490794-126496408 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 7, 69.25 cM

Strain
Comparison

• SNPs within 2kb
  31 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5313097	lncRNA gene	Chr7:126490794-126496408 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0015690	unclassified non-coding RNA gene	Chr7:131197902-131203516 (+)
A/J	MGP_AJ_G0015668	unclassified non-coding RNA gene	Chr7:127717429-127723047 (+)
AKR/J	MGP_AKRJ_G0015631	unclassified non-coding RNA gene	Chr7:130952757-130958363 (+)
BALB/cJ	MGP_BALBcJ_G0015629	unclassified non-coding RNA gene	Chr7:127380967-127386573 (+)
C3H/HeJ	MGP_C3HHeJ_G0015451	unclassified non-coding RNA gene	Chr7:130890910-130896528 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0016084	unclassified non-coding RNA gene	Chr7:136298433-136304047 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013813	unclassified non-coding RNA gene	Chr7:128911312-128917866 (+)
CAST/EiJ	MGP_CASTEiJ_G0015006	unclassified non-coding RNA gene	Chr7:122676593-122682199 (+)
CBA/J	MGP_CBAJ_G0015432	unclassified non-coding RNA gene	Chr7:140887244-140892858 (+)
DBA/2J	MGP_DBA2J_G0015528	unclassified non-coding RNA gene	Chr7:125692993-125698604 (+)
FVB/NJ	MGP_FVBNJ_G0015534	unclassified non-coding RNA gene	Chr7:125544134-125549747 (+)
LP/J	MGP_LPJ_G0015608	unclassified non-coding RNA gene	Chr7:132664182-132669796 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0015556	unclassified non-coding RNA gene	Chr7:142056051-142061661 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0016126	unclassified non-coding RNA gene	Chr7:129963441-129969063 (+)
PWK/PhJ	MGP_PWKPhJ_G0014788	unclassified non-coding RNA gene	Chr7:118687810-118693473 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0014577	unclassified non-coding RNA gene	Chr7:116807978-116813484 (+)
WSB/EiJ	MGP_WSBEiJ_G0015111	unclassified non-coding RNA gene	Chr7:130941727-130947313 (+)

Homology

• Gene Tree
  Gm20650
  

Human Diseases

• References
  3 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  35 phenotype references
  

• All Mutations and Alleles
  7
• Gene trapped
  2
• Targeted
  5
• Genomic Mutations
  5 involving Gm20650
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000093768 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000093768	Ensembl Gene Model | MGI Sequence Detail	5615	C57BL/6J
transcript	ENSMUST00000175690	Ensembl | MGI Sequence Detail	198	Not Applicable

References

• Summaries
  All 37

  Diseases 3

  Phenotypes 35
• Earliest
  J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14
• Latest
  J:342026 Hasegawa Y, et al., Microglial cannabinoid receptor type 1 mediates social memory deficits in mice produced by adolescent THC exposure and 16p11.2 duplication. Nat Commun. 2023 Oct 25;14(1):6559