Gm20642 Gene Detail

Summary

• Symbol
  Gm20642
• Name
  predicted gene 20642

• Feature Type
  lncRNA gene
• IDs
  MGI:5313089
  NCBI Gene: 102634076
• Alliance
  gene page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr14:38942028-38972387 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 14, 22.22 cM

Strain
Comparison

• SNPs within 2kb
  83 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5313089	lncRNA gene	Chr14:38930662-38972387 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0003238	antisense lncRNA gene	Chr14:32803721-32837502 (+)
A/J	MGP_AJ_G0003214	antisense lncRNA gene	Chr14:31465812-31497584 (+)
AKR/J	MGP_AKRJ_G0003197	antisense lncRNA gene	Chr14:32829525-32861202 (+)
BALB/cJ	MGP_BALBcJ_G0003201	antisense lncRNA gene	Chr14:31710575-31741266 (+)
C3H/HeJ	MGP_C3HHeJ_G0003157	antisense lncRNA gene	Chr14:32765752-32797034 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0003344	antisense lncRNA gene	Chr14:34019527-34053401 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0002870	antisense lncRNA gene	Chr14:31271526-31305658 (+)
CAST/EiJ	MGP_CASTEiJ_G0003123	antisense lncRNA gene	Chr14:32589412-32620044 (+)
CBA/J	MGP_CBAJ_G0003154	antisense lncRNA gene	Chr14:35296180-35330058 (+)
DBA/2J	MGP_DBA2J_G0003159	antisense lncRNA gene	Chr14:31481526-31511524 (+)
FVB/NJ	MGP_FVBNJ_G0003177	antisense lncRNA gene	Chr14:31431354-31463770 (+)
LP/J	MGP_LPJ_G0003235	antisense lncRNA gene	Chr14:33034223-33064888 (+)
NOD/ShiLtJ	no annotation
NZO/HlLtJ	MGP_NZOHlLtJ_G0003345	antisense lncRNA gene	Chr14:32679081-32709965 (+)
PWK/PhJ	MGP_PWKPhJ_G0003081	antisense lncRNA gene	Chr14:31001863-31032521 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0003027	antisense lncRNA gene	Chr14:32277193-32309486 (+)
WSB/EiJ	MGP_WSBEiJ_G0003157	antisense lncRNA gene	Chr14:32741919-32773603 (+)

Homology

• Gene Tree
  Gm20642
  

Expression

• Assay Results
  706
• cDNA Data
  4

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  2

• Ensembl
  ENSMUSG00000093383 (Evidence)
• NCBI Gene
  102634076

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000093383	Ensembl Gene Model | MGI Sequence Detail	30360	C57BL/6J
transcript	ENSMUST00000177185	Ensembl | MGI Sequence Detail	1512	Not Applicable

Molecular
Reagents

• All nucleic 4

  cDNA 4

References

• Summaries
  All 6
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:57747 MGI Genome Annotation Group and UniGene Staff, MGI-UniGene Interconnection Effort. Database Download. 2015;

TSS for Gm20642:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr125124	Chr14:38942066-38942082 (+)	46 bp
Tssr125125	Chr14:38942096-38942098 (+)	69 bp