Gm20621 Gene Detail

Summary

• Symbol
  Gm20621
• Name
  predicted gene 20621

• Feature Type
  lncRNA gene
• IDs
  MGI:5313068
  NCBI Gene: 100502684
• Alliance
  gene page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr15:88773983-88775728 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 15, 44.39 cM

Strain
Comparison

• SNPs within 2kb
  11 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5313068	lncRNA gene	Chr15:88773983-88775728 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0037107	sense overlapping lncRNA gene	Chr15:90050825-90052566 (-)
A/J	MGP_AJ_G0037094	sense overlapping lncRNA gene	Chr15:86615481-86617224 (-)
AKR/J	MGP_AKRJ_G0037042	sense overlapping lncRNA gene	Chr15:89177485-89179220 (-)
BALB/cJ	MGP_BALBcJ_G0037085	sense overlapping lncRNA gene	Chr15:86716060-86717799 (-)
C3H/HeJ	MGP_C3HHeJ_G0036772	sense overlapping lncRNA gene	Chr15:89162170-89163909 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0037599	sense overlapping lncRNA gene	Chr15:93320914-93322708 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0034642	sense overlapping lncRNA gene	Chr15:82845372-82847140 (-)
CAST/EiJ	MGP_CASTEiJ_G0035959	sense overlapping lncRNA gene	Chr15:89946382-89948122 (-)
CBA/J	MGP_CBAJ_G0036747	sense overlapping lncRNA gene	Chr15:96491998-96493736 (-)
DBA/2J	MGP_DBA2J_G0036922	sense overlapping lncRNA gene	Chr15:86052470-86054206 (-)
FVB/NJ	MGP_FVBNJ_G0036872	sense overlapping lncRNA gene	Chr15:85134498-85136484 (-)
LP/J	MGP_LPJ_G0036969	sense overlapping lncRNA gene	Chr15:90219125-90220860 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0036880	sense overlapping lncRNA gene	Chr15:100924894-100926644 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0037716	sense overlapping lncRNA gene	Chr15:89206374-89208113 (-)
PWK/PhJ	MGP_PWKPhJ_G0035653	sense overlapping lncRNA gene	Chr15:86112070-86113867 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0035460	sense overlapping lncRNA gene	Chr15:88950477-88952246 (-)
WSB/EiJ	MGP_WSBEiJ_G0036161	sense overlapping lncRNA gene	Chr15:89694825-89696561 (-)

Homology

• Gene Tree
  Gm20621
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  17 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving Gm20621
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22

• Ensembl
  ENSMUSG00000093394 (Evidence)
• NCBI Gene
  100502684

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000093394	Ensembl Gene Model | MGI Sequence Detail	1746	C57BL/6J
transcript	ENSMUST00000176618	Ensembl | MGI Sequence Detail	1234	Not Applicable

References

• Summaries
  All 20

  Phenotypes 17
• Earliest
  J:7688 Lane PW, et al., Association of megacolon with a new dominant spotting gene (Dom) in the mouse. J Hered. 1984 Nov-Dec;75(6):435-9
• Latest
  J:285676 Suzuki A, et al., Genes and microRNAs associated with mouse cleft palate: A systematic review and bioinformatics analysis. Mech Dev. 2018 Apr;150:21-27

TSS for Gm20621:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr135821	Chr15:88775723-88775733 (-)	0 bp
Tssr135820	Chr15:88775684-88775721 (-)	25 bp
Tssr135819	Chr15:88775658-88775681 (-)	58 bp