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2410089E03Rik
Gene Detail
 Symbol
Name
ID
2410089E03Rik
RIKEN cDNA 2410089E03 gene
MGI:1920942
Synonyms 4732468D17Rik, b2b012Clo
Feature Type protein coding gene
Genetic Map
Chromosome 15
3.82 cM, cytoband A2
Detailed Genetic Map ± 1 cM


Mapping data(2)
Sequence Map
Chr15:8169106-8271158 bp, + strand
From VEGA annotation of GRCm38

  102053 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:11315  Vertebrate Homology Class
1 human; 1 mouse; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken; 1 zebrafish

Gene Tree: 2410089E03Rik

Human
homologs
Human Homolog C5orf42, chromosome 5 open reading frame 42
NCBI Gene ID 65250
neXtProt AC  NX_Q9H799
Human Synonyms  JBTS17
Human Chr (Location)  5p13.2; chr5:37067870-37249428 (-)  GRCh38
Disease Associations  (2) Diseases Associated with Human C5orf42
Mutations,
alleles, and
phenotypes
All mutations/alleles(6) : Chemically induced (ENU)(1) Gene trapped(3) Targeted(1) Transposon induced(1)
Genomic Mutations involving 2410089E03Rik (1)
Incidental mutations (data from Mutagenetix , APF )
 
Homozygotes exhibit double outlet right ventricle {SDD}, pulmonary atresia/hypolastic pulmonary artery, atrioventricular septal defect, and right aortic arch. Non-cardiovascular defects include cleft palate, polydactyly, transparent chest wall (sternal bone hypoplasia) and hypoplastic lungs.
 
Phenotype Images(64)
Interactions
2410089E03Rik interacts with 170 markers (Mir1a-1, Mir1a-2, Mir10a, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (4 annotations)
Process biological_process
Component integral component of membrane, membrane
Function molecular_function
External Resources: FuncBase
Expression
cDNA source data(10)
External Resources: Allen Institute   GEO   Expression Atlas
Molecular
reagents
All nucleic(10) cDNA(10)
Microarray probesets(9)
Other database
links
VEGA Gene ModelOTTMUSG00000022443 (Evidence)
Ensembl Gene ModelENSMUSG00000039801 (Evidence)
Entrez Gene73692 (Evidence)
DFCITC1581936, TC1601600, TC1608418, TC1633142, TC1646382, TC1670479, TC1688920
DoTSDT.101139177, DT.101718772, DT.40146246, DT.60117403, DT.91334194, DT.94171854
NIA Mouse Gene IndexU016054, U365170, U378908
Consensus CDS ProjectCCDS49578.1
International Mouse Knockout Project Status2410089E03Rik
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000022443 VEGA Gene Model | MGI Sequence Detail 102053 C57BL/6J ±  kb
transcript OTTMUST00000053654 VEGA | MGI Sequence Detail 10469 Not Applicable 
polypeptide OTTMUSP00000025520 VEGA | MGI Sequence Detail 3214 Not Applicable 

For the selected sequences
All sequences(61) RefSeq(15) UniProt(1)
Polymorphisms SNPs within 2kb(491 from dbSNP Build 137)
References (Earliest) J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
(Latest) J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
All references(30)
Other
accession IDs
MGI:2447821, MGI:5300208

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
08/19/2014
MGI 5.19
The Jackson Laboratory