Snord123 Gene Detail

Summary

• Symbol
  Snord123
• Name
  small nucleolar RNA, C/D box 123

• Feature Type
  snoRNA gene
• IDs
  MGI:5297223
  NCBI Gene: 66835
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr15:32241999-32242069 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 15, 13.02 cM

Strain
Comparison

• SNPs within 2kb
  47 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5297223	snoRNA gene	Chr15:32241991-32242078 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0038800	snoRNA gene	Chr15:30543515-30543585 (-)
A/J	MGP_AJ_G0038792	snoRNA gene	Chr15:29314712-29314782 (-)
AKR/J	MGP_AKRJ_G0038727	snoRNA gene	Chr15:30058356-30058426 (-)
BALB/cJ	MGP_BALBcJ_G0038777	snoRNA gene	Chr15:29309702-29309772 (-)
C3H/HeJ	MGP_C3HHeJ_G0038439	snoRNA gene	Chr15:30083386-30083456 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0039323	snoRNA gene	Chr15:31731461-31731531 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0036064	snoRNA gene	Chr15:27358533-27358603 (-)
CAST/EiJ	MGP_CASTEiJ_G0037581	snoRNA gene	Chr15:30574827-30574897 (-)
CBA/J	MGP_CBAJ_G0038412	snoRNA gene	Chr15:32626113-32626183 (-)
DBA/2J	MGP_DBA2J_G0038600	snoRNA gene	Chr15:29111869-29111939 (-)
FVB/NJ	MGP_FVBNJ_G0038554	snoRNA gene	Chr15:28614663-28614733 (-)
LP/J	MGP_LPJ_G0038640	snoRNA gene	Chr15:30430231-30430301 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0038552	snoRNA gene	Chr15:35617319-35617389 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0039426	snoRNA gene	Chr15:30287678-30287748 (-)
PWK/PhJ	MGP_PWKPhJ_G0037266	snoRNA gene	Chr15:29257694-29257764 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0037021	snoRNA gene	Chr15:30065486-30065556 (-)
WSB/EiJ	MGP_WSBEiJ_G0037810	snoRNA gene	Chr15:30265534-30265604 (-)

Homology

• Human Ortholog
  SNORD123, small nucleolar RNA, C/D box 123

• Vertebrate Orthologs
  1

Vertebrate Orthology Source

Alliance of Genome Resources

• Human Ortholog
  SNORD123, small nucleolar RNA, C/D box 123
  
• Links
  HGNC:33562

  NCBI Gene ID: 100113384

  
  
• Chr Location
  5p15.31; chr5:9548827-9548914 (+)  GRCh38

---

• MGI Vertebrate Homology
  Snord123 stringent orthology
  1 human;1 mouse
  
• HCOP
  vertebrate homology predictions: SNORD123
• Gene Tree
  Snord123
  

Expression

• Assay Results
  706
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000089317 (Evidence)
• NCBI Gene
  66835

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000089317	Ensembl Gene Model | MGI Sequence Detail	71	C57BL/6J
transcript	ENSMUST00000158692	Ensembl | MGI Sequence Detail	71	Not Applicable

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 5
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;