Gm20548 Gene Detail

Summary

• Symbol
  Gm20548
• Name
  predicted gene 20548

• Feature Type
  lncRNA gene
• IDs
  MGI:5142013
  NCBI Gene: 108169124
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr5:101985282-101994276 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, 48.96 cM

Strain
Comparison

• SNPs within 2kb
  32 from dbSNP Build 142
• Strain Annotations
  16

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5142013	lncRNA gene	Chr5:101985282-101994276 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0004125	antisense lncRNA gene	Chr5:103420623-103429602 (+)
A/J	no annotation
AKR/J	MGP_AKRJ_G0004085	antisense lncRNA gene	Chr5:102786836-102795815 (+)
BALB/cJ	no annotation
C3H/HeJ	MGP_C3HHeJ_G0004039	antisense lncRNA gene	Chr5:103166489-103175388 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0004240	antisense lncRNA gene	Chr5:107683266-107694590 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003717	antisense lncRNA gene	Chr5:94756725-94765764 (+)
CAST/EiJ	MGP_CASTEiJ_G0004002	antisense lncRNA gene	Chr5:101860488-101867352 (+)
CBA/J	MGP_CBAJ_G0004033	antisense lncRNA gene	Chr5:111441618-111450612 (+)
DBA/2J	MGP_DBA2J_G0004048	antisense lncRNA gene	Chr5:99726632-99736053 (+)
FVB/NJ	MGP_FVBNJ_G0004066	antisense lncRNA gene	Chr5:98525620-98534614 (+)
LP/J	MGP_LPJ_G0004127	antisense lncRNA gene	Chr5:104005932-104014911 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0004055	antisense lncRNA gene	Chr5:116444362-116453341 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0004236	antisense lncRNA gene	Chr5:102307602-102318561 (+)
PWK/PhJ	MGP_PWKPhJ_G0003955	antisense lncRNA gene	Chr5:98182756-98191875 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0003899	antisense lncRNA gene	Chr5:99968253-99977441 (+)
WSB/EiJ	MGP_WSBEiJ_G0004037	antisense lncRNA gene	Chr5:102664413-102673368 (+)

Homology

• Gene Tree
  Gm20548
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  7 phenotype references
  

• All Mutations and Alleles
  4
• Chemically induced (other)
  1
• Gene trapped
  1
• Radiation induced
  1
• Spontaneous
  1
• Genomic Mutations
  3 involving Gm20548
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22

• Ensembl
  ENSMUSG00000092354 (Evidence)
• NCBI Gene
  108169124

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000092354	Ensembl Gene Model | MGI Sequence Detail	8995	C57BL/6J
transcript	ENSMUST00000174528	Ensembl | MGI Sequence Detail	791	Not Applicable

References

• Summaries
  All 10

  Phenotypes 7
• Earliest
  J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
• Latest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17