Gm20538 Gene Detail

Summary

• Symbol
  Gm20538
• Name
  predicted gene 20538

• Feature Type
  protein coding gene
• IDs
  MGI:5142003
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr19:44524144-44543840 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 19, 37.98 cM

Strain
Comparison

• SNPs within 2kb
  140 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5142003	protein coding gene	Chr19:44524144-44543840 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0025173	protein coding gene	Chr19:44043697-44052800 (-)
A/J	MGP_AJ_G0025150	protein coding gene	Chr19:41934268-41943534 (-)
AKR/J	MGP_AKRJ_G0025118	protein coding gene	Chr19:43283462-43292593 (-)
BALB/cJ	MGP_BALBcJ_G0025144	protein coding gene	Chr19:41984410-41993548 (-)
C3H/HeJ	MGP_C3HHeJ_G0024904	protein coding gene	Chr19:43437761-43446928 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0025587	protein coding gene	Chr19:45125389-45136629 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0023001	protein coding gene	Chr19:41206327-41215376 (-)
CAST/EiJ	MGP_CASTEiJ_G0024369	protein coding gene	Chr19:43164130-43173227 (-)
CBA/J	MGP_CBAJ_G0024884	protein coding gene	Chr19:47396552-47408275 (-)
DBA/2J	MGP_DBA2J_G0025016	protein coding gene	Chr19:41752218-41761318 (-)
FVB/NJ	MGP_FVBNJ_G0024977	protein coding gene	Chr19:41523128-41532241 (-)
LP/J	MGP_LPJ_G0025102	protein coding gene	Chr19:43980580-43989697 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0025008	protein coding gene	Chr19:46833616-46844074 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0025645	protein coding gene	Chr19:43354175-43363894 (-)
PWK/PhJ	MGP_PWKPhJ_G0024118	protein coding gene	Chr19:41650350-41660524 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0023922	protein coding gene	Chr19:42043563-42052652 (-)
WSB/EiJ	MGP_WSBEiJ_G0024439	protein coding gene	Chr19:43481502-43491644 (-)

Homology

• Gene Tree
  Gm20538
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• UniProt
  1

• Ensembl
  ENSMUSG00000091471 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000091471	Ensembl Gene Model | MGI Sequence Detail	19697	C57BL/6J
transcript	ENSMUST00000166808	Ensembl | MGI Sequence Detail	996	Not Applicable
polypeptide	ENSMUSP00000126763	Ensembl | MGI Sequence Detail	332	Not Applicable

Protein
Information

• UniProt
  1 Sequence
• InterPro Domains
  IPR008699 NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 8
  IPR040251 Protein transport protein SEC31-like
  IPR001680 WD40 repeat
  IPR019775 WD40 repeat, conserved site
  IPR036322 WD40-repeat-containing domain superfamily
  IPR015943 WD40/YVTN repeat-like-containing domain superfamily

References

• Summaries
  All 3
• Earliest
  J:53168 Bairoch A, et al., SWISS-PROT Annotated protein sequence database. Database Release. 1999;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;

TSS for Gm20538:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr159532	Chr19:44543837-44543876 (-)	-17 bp